SHOGoiN Cell Methylome: GSM2773570

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773570


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M197Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254482 chaperonin containing TCP1, subunit 6A (zeta 1) (CCT6A) pseudogene 2.9886 0.0000
2 ENSG00000224169 HSFY6P heat shock transcription factor Y-linked 6, pseudogene 2.8074 0.0000
3 ENSG00000270207 novel transcript, antisense to GRM7 2.5850 0.0000
4 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.5000 0.0000
5 ENSG00000213754 karyopherin alpha 4 (importin alpha 3) (KPNA4) pseudogene 2.4973 0.0000
6 ENSG00000231060 FARSBP1 FARSB pseudogene 1 2.3219 0.0002
7 ENSG00000232841 BRWD1P3 bromodomain and WD repeat domain containing 1 pseudogene 3 2.3219 0.0000
8 ENSG00000235413 KRT18P63 keratin 18 pseudogene 63 2.3219 0.0002
9 ENSG00000239102 RNU7-185P RNA, U7 small nuclear 185 pseudogene 2.3219 0.0000
10 ENSG00000251127 novel transcript 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000283977 novel transcript -2.3138 0.0000
63340 ENSG00000181541 MAB21L2 mab-21 like 2 -2.3137 0.0295
63339 ENSG00000188938 FAM120AOS family with sequence similarity 120A opposite strand -2.3131 0.0000
63338 ENSG00000255289 novel transcript -2.3130 0.0000
63337 ENSG00000279936 TEC -2.3130 0.0000
63336 ENSG00000184207 PGP phosphoglycolate phosphatase -2.3121 0.0000
63335 ENSG00000087053 MTMR2 myotubularin related protein 2 -2.3118 0.0000
63334 ENSG00000271824 SMIM32 small integral membrane protein 32 -2.3113 0.0000
63333 ENSG00000185668 POU3F1 POU class 3 homeobox 1 -2.3109 0.0000
63332 ENSG00000183307 TMEM121B transmembrane protein 121B -2.3108 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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