Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773570

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773570


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M197Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254482 chaperonin containing TCP1, subunit 6A (zeta 1) (CCT6A) pseudogene 2.9886 0.0000
2 ENSG00000224169 HSFY6P heat shock transcription factor Y-linked 6, pseudogene 2.8074 0.0000
3 ENSG00000270207 novel transcript, antisense to GRM7 2.5850 0.0000
4 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.5000 0.0000
5 ENSG00000213754 KPNA4P1 KPNA4 pseudogene 1 2.4973 0.0000
6 ENSG00000231060 FARSBP1 FARSB pseudogene 1 2.3219 0.0002
7 ENSG00000232841 BRWD1P3 bromodomain and WD repeat domain containing 1 pseudogene 3 2.3219 0.0000
8 ENSG00000235413 KRT18P63 keratin 18 pseudogene 63 2.3219 0.0002
9 ENSG00000239102 RNU7-185P RNA, U7 small nuclear 185 pseudogene 2.3219 0.0000
10 ENSG00000251127 novel transcript 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000279284 TEC gene -2.2428 0.0000
63127 ENSG00000233708 epidermodysplasia verruciformis 1 (EVER1) pseudogene -2.2427 0.0000
63126 ENSG00000107789 MINPP1 multiple inositol-polyphosphate phosphatase 1 -2.2426 0.0000
63125 ENSG00000105447 GRWD1 glutamate rich WD repeat containing 1 -2.2423 0.0000
63124 ENSG00000180228 PRKRA protein activator of interferon induced protein kinase EIF2AK2 -2.2422 0.0000
63123 ENSG00000255811 novel transcript, antisense to GJB4 and GJB3 -2.2420 0.0000
63122 ENSG00000283204 MIR4434 microRNA 4434 -2.2419 0.0000
63121 ENSG00000283503 LINC01902 long intergenic non-protein coding RNA 1902 -2.2417 0.0000
63120 ENSG00000124900 TRIM51 tripartite motif-containing 51 -2.2414 0.0000
63119 ENSG00000104332 SFRP1 secreted frizzled related protein 1 -2.2413 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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