Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773571

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773571 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M198	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000258600		novel transcript	2.8074	0.0000
2	ENSG00000254594	LINC02686	long intergenic non-protein coding RNA 2686	2.3219	0.0002
3	ENSG00000207874	MIR610	microRNA 610	2.0000	0.0017
4	ENSG00000225486		acid phosphatase 1, soluble (ACP1) pseudogene	2.0000	0.0000
5	ENSG00000233460	RPL35AP31	ribosomal protein L35a pseudogene 31	2.0000	0.0000
6	ENSG00000242810	MRPL42P6	mitochondrial ribosomal protein L42 pseudogene 6	2.0000	0.0000
7	ENSG00000249690		novel transcript, antisense to LRBA	2.0000	0.0017
8	ENSG00000263600	MIR3915	microRNA 3915	2.0000	0.0000
9	ENSG00000279530		TEC	2.0000	0.0017
10	ENSG00000280837	CPS1-IT1	CPS1 intronic transcript 1	2.0000	0.0017

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000270378		ribosomal protein L36a-like (RPL36AL) pseudogene	-2.2033	0.0000
63127	ENSG00000231050		novel transcript	-2.2032	0.0000
63126	ENSG00000226534		pseudogene similar to part of sushi domain containing 2 (SUSD2)	-2.2023	0.0000
63125	ENSG00000176170	SPHK1	sphingosine kinase 1	-2.2021	0.0000
63124	ENSG00000255533		mitochondrial ribosomal protein S24 (MRPS24) pseudogene	-2.2019	0.0000
63123	ENSG00000256940	PPP1R14B-AS1	PPP1R14B antisense RNA 1	-2.2018	0.0000
63122	ENSG00000225792		novel transcript	-2.2018	0.0000
63121	ENSG00000069535	MAOB	monoamine oxidase B	-2.2017	0.0000
63120	ENSG00000179846	NKPD1	NTPase KAP family P-loop domain containing 1	-2.2017	0.0000
63119	ENSG00000197406	DIO3	iodothyronine deiodinase 3	-2.2016	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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