Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773571
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773571
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M198
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000258600
novel transcript
2.8074
0.0000
2
ENSG00000254594
LINC02686
long intergenic non-protein coding RNA 2686
2.3219
0.0002
3
ENSG00000207874
MIR610
microRNA 610
2.0000
0.0017
4
ENSG00000225486
acid phosphatase 1, soluble (ACP1) pseudogene
2.0000
0.0000
5
ENSG00000233460
RPL35AP31
ribosomal protein L35a pseudogene 31
2.0000
0.0000
6
ENSG00000242810
MRPL42P6
mitochondrial ribosomal protein L42 pseudogene 6
2.0000
0.0000
7
ENSG00000249690
novel transcript, antisense to LRBA
2.0000
0.0017
8
ENSG00000263600
MIR3915
microRNA 3915
2.0000
0.0000
9
ENSG00000279530
TEC
2.0000
0.0017
10
ENSG00000280837
CPS1-IT1
CPS1 intronic transcript 1
2.0000
0.0017
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000270378
ribosomal protein L36a-like (RPL36AL) pseudogene
-2.2033
0.0000
63127
ENSG00000231050
novel transcript
-2.2032
0.0000
63126
ENSG00000226534
pseudogene similar to part of sushi domain containing 2 (SUSD2)
-2.2023
0.0000
63125
ENSG00000176170
SPHK1
sphingosine kinase 1
-2.2021
0.0000
63124
ENSG00000255533
mitochondrial ribosomal protein S24 (MRPS24) pseudogene
-2.2019
0.0000
63123
ENSG00000256940
PPP1R14B-AS1
PPP1R14B antisense RNA 1
-2.2018
0.0000
63122
ENSG00000225792
novel transcript
-2.2018
0.0000
63121
ENSG00000069535
MAOB
monoamine oxidase B
-2.2017
0.0000
63120
ENSG00000179846
NKPD1
NTPase KAP family P-loop domain containing 1
-2.2017
0.0000
63119
ENSG00000197406
DIO3
iodothyronine deiodinase 3
-2.2016
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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