SHOGoiN Cell Methylome: GSM2773571

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773571


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M198Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000258600 novel transcript 2.8074 0.0000
2 ENSG00000254594 LINC02686 long intergenic non-protein coding RNA 2686 2.3219 0.0002
3 ENSG00000207874 MIR610 microRNA 610 2.0000 0.0017
4 ENSG00000225486 acid phosphatase 1, soluble (ACP1) pseudogene 2.0000 0.0000
5 ENSG00000233460 RPL35AP31 ribosomal protein L35a pseudogene 31 2.0000 0.0000
6 ENSG00000242810 MRPL42P6 mitochondrial ribosomal protein L42 pseudogene 6 2.0000 0.0000
7 ENSG00000249690 novel transcript, antisense to LRBA 2.0000 0.0017
8 ENSG00000263600 MIR3915 microRNA 3915 2.0000 0.0000
9 ENSG00000279530 TEC 2.0000 0.0017
10 ENSG00000280837 CPS1-IT1 CPS1 intronic transcript 1 2.0000 0.0017

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000199396 RNA5S5 RNA, 5S ribosomal 5 -2.2749 0.0853
63340 ENSG00000261727 kinase suppressor of ras 1 (KSR1) pseudogene -2.2745 0.0000
63339 ENSG00000246331 novel transcript -2.2740 0.0000
63338 ENSG00000113580 NR3C1 nuclear receptor subfamily 3 group C member 1 -2.2732 0.0000
63337 ENSG00000197885 NKIRAS1 NFKB inhibitor interacting Ras like 1 -2.2729 0.0000
63336 ENSG00000151229 SLC2A13 solute carrier family 2 member 13 -2.2724 0.0000
63335 ENSG00000186897 C1QL4 complement C1q like 4 -2.2719 0.0000
63334 ENSG00000104432 IL7 interleukin 7 -2.2707 0.0000
63333 ENSG00000253806 novel transcript -2.2704 0.0000
63332 ENSG00000204128 C2orf72 chromosome 2 open reading frame 72 -2.2703 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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