Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773571

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773571


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M198Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000258600 novel transcript 2.8074 0.0000
2 ENSG00000254594 LINC02686 long intergenic non-protein coding RNA 2686 2.3219 0.0002
3 ENSG00000207874 MIR610 microRNA 610 2.0000 0.0017
4 ENSG00000225486 acid phosphatase 1, soluble (ACP1) pseudogene 2.0000 0.0000
5 ENSG00000233460 RPL35AP31 ribosomal protein L35a pseudogene 31 2.0000 0.0000
6 ENSG00000242810 MRPL42P6 mitochondrial ribosomal protein L42 pseudogene 6 2.0000 0.0000
7 ENSG00000249690 novel transcript, antisense to LRBA 2.0000 0.0017
8 ENSG00000263600 MIR3915 microRNA 3915 2.0000 0.0000
9 ENSG00000279530 TEC 2.0000 0.0017
10 ENSG00000280837 CPS1-IT1 CPS1 intronic transcript 1 2.0000 0.0017

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000270378 ribosomal protein L36a-like (RPL36AL) pseudogene -2.2033 0.0000
63127 ENSG00000231050 novel transcript -2.2032 0.0000
63126 ENSG00000226534 pseudogene similar to part of sushi domain containing 2 (SUSD2) -2.2023 0.0000
63125 ENSG00000176170 SPHK1 sphingosine kinase 1 -2.2021 0.0000
63124 ENSG00000255533 mitochondrial ribosomal protein S24 (MRPS24) pseudogene -2.2019 0.0000
63123 ENSG00000256940 PPP1R14B-AS1 PPP1R14B antisense RNA 1 -2.2018 0.0000
63122 ENSG00000225792 novel transcript -2.2018 0.0000
63121 ENSG00000069535 MAOB monoamine oxidase B -2.2017 0.0000
63120 ENSG00000179846 NKPD1 NTPase KAP family P-loop domain containing 1 -2.2017 0.0000
63119 ENSG00000197406 DIO3 iodothyronine deiodinase 3 -2.2016 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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