SHOGoiN Cell Methylome: GSM2773571
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773571 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M198 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000258600 | novel transcript | 2.8074 | 0.0000 | |
| 2 | ENSG00000254594 | LINC02686 | long intergenic non-protein coding RNA 2686 | 2.3219 | 0.0002 |
| 3 | ENSG00000207874 | MIR610 | microRNA 610 | 2.0000 | 0.0017 |
| 4 | ENSG00000225486 | acid phosphatase 1, soluble (ACP1) pseudogene | 2.0000 | 0.0000 | |
| 5 | ENSG00000233460 | RPL35AP31 | ribosomal protein L35a pseudogene 31 | 2.0000 | 0.0000 |
| 6 | ENSG00000242810 | MRPL42P6 | mitochondrial ribosomal protein L42 pseudogene 6 | 2.0000 | 0.0000 |
| 7 | ENSG00000249690 | novel transcript, antisense to LRBA | 2.0000 | 0.0017 | |
| 8 | ENSG00000263600 | MIR3915 | microRNA 3915 | 2.0000 | 0.0000 |
| 9 | ENSG00000279530 | TEC | 2.0000 | 0.0017 | |
| 10 | ENSG00000280837 | CPS1-IT1 | CPS1 intronic transcript 1 | 2.0000 | 0.0017 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000199396 | RNA5S5 | RNA, 5S ribosomal 5 | -2.2749 | 0.0853 |
| 63340 | ENSG00000261727 | kinase suppressor of ras 1 (KSR1) pseudogene | -2.2745 | 0.0000 | |
| 63339 | ENSG00000246331 | novel transcript | -2.2740 | 0.0000 | |
| 63338 | ENSG00000113580 | NR3C1 | nuclear receptor subfamily 3 group C member 1 | -2.2732 | 0.0000 |
| 63337 | ENSG00000197885 | NKIRAS1 | NFKB inhibitor interacting Ras like 1 | -2.2729 | 0.0000 |
| 63336 | ENSG00000151229 | SLC2A13 | solute carrier family 2 member 13 | -2.2724 | 0.0000 |
| 63335 | ENSG00000186897 | C1QL4 | complement C1q like 4 | -2.2719 | 0.0000 |
| 63334 | ENSG00000104432 | IL7 | interleukin 7 | -2.2707 | 0.0000 |
| 63333 | ENSG00000253806 | novel transcript | -2.2704 | 0.0000 | |
| 63332 | ENSG00000204128 | C2orf72 | chromosome 2 open reading frame 72 | -2.2703 | 0.0000 |
