SHOGoiN Cell Methylome: GSM2773572

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773572


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M199Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 3.0000 0.0000
2 ENSG00000226426 novel transcript 2.7737 0.0000
3 ENSG00000207589 MIR508 microRNA 508 2.5850 0.0000
4 ENSG00000207731 MIR506 microRNA 506 2.5850 0.0000
5 ENSG00000207969 MIR507 microRNA 507 2.5850 0.0000
6 ENSG00000264131 novel transcript 2.5850 0.0000
7 ENSG00000267430 proteasome (prosome, macropain) 26S subunit, ATPase, 5 (PSMC5) pseudogene 2.5850 0.0000
8 ENSG00000202279 NA 2.3219 0.0000
9 ENSG00000223189 RNU6-177P RNA, U6 small nuclear 177, pseudogene 2.3219 0.0000
10 ENSG00000232587 EEF1A1P3 eukaryotic translation elongation factor 1 alpha 1 pseudogene 3 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000238875 RN7SKP210 RN7SK pseudogene 210 -2.0000 1.0000
63340 ENSG00000238764 NA -2.0000 0.6110
63339 ENSG00000238724 NA -2.0000 1.0000
63338 ENSG00000238247 pseudogene similar to part of radixin (RDX) -2.0000 1.0000
63337 ENSG00000237293 novel transcript -2.0000 0.1641
63336 ENSG00000237135 DDX10P1 DEAD-box helicase 10 pseudogene 1 -2.0000 1.0000
63335 ENSG00000237014 leucine rich repeat (in FLII) interacting protein 2 (LRRFIP2) pseudogene -2.0000 1.0000
63334 ENSG00000236276 NDP-AS1 NDP antisense RNA 1 -2.0000 0.3824
63333 ENSG00000236052 LINC01643 long intergenic non-protein coding RNA 1643 -2.0000 1.0000
63332 ENSG00000235510 transmembrane 4 superfamily member 10 (TM4SF10) pseudogene -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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