Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773572

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773572


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M199Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 3.0000 0.0000
2 ENSG00000226426 novel transcript 2.7737 0.0000
3 ENSG00000207589 MIR508 microRNA 508 2.5850 0.0000
4 ENSG00000207731 MIR506 microRNA 506 2.5850 0.0000
5 ENSG00000207969 MIR507 microRNA 507 2.5850 0.0000
6 ENSG00000264131 novel transcript 2.5850 0.0000
7 ENSG00000267430 proteasome (prosome, macropain) 26S subunit, ATPase, 5 (PSMC5) pseudogene 2.5850 0.0000
8 ENSG00000202279 Y RNA 2.3219 0.0000
9 ENSG00000223189 RNU6-177P RNA, U6 small nuclear 177, pseudogene 2.3219 0.0000
10 ENSG00000232587 EEF1A1P3 eukaryotic translation elongation factor 1 alpha 1 pseudogene 3 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000148444 COMMD3 COMM domain containing 3 -1.9445 0.0000
63127 ENSG00000251744 NA -1.9442 0.1011
63126 ENSG00000239381 novel transcript -1.9434 0.0000
63125 ENSG00000268336 SIGLEC20P sialic acid binding Ig like lectin 20, pseudogene -1.9431 0.0000
63124 ENSG00000164074 ABHD18 abhydrolase domain containing 18 -1.9430 0.0000
63123 ENSG00000198083 KRTAP9-9 keratin associated protein 9-9 -1.9428 0.1566
63122 ENSG00000129514 FOXA1 forkhead box A1 -1.9422 0.0000
63121 ENSG00000231090 MIR4422HG MIR4422 host gene -1.9419 0.0000
63120 ENSG00000112110 MRPL18 mitochondrial ribosomal protein L18 -1.9419 0.0000
63119 ENSG00000253671 novel transcript -1.9417 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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