Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773573

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773573


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M200Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223744 RBMY2GP RNA binding motif protein Y-linked family 2 member G, pseudogene 3.1699 0.0000
2 ENSG00000214178 PPIAP23 peptidylprolyl isomerase A pseudogene 23 2.8074 0.0000
3 ENSG00000270524 QTRT1P1 queuine tRNA-ribosyltransferase catalytic subunit 1 pseudogene 1 2.8074 0.0000
4 ENSG00000212546 RNU6-995P RNA, U6 small nuclear 995, pseudogene 2.6455 0.0000
5 ENSG00000216859 DHFRP5 dihydrofolate reductase pseudogene 5 2.5850 0.0000
6 ENSG00000248773 novel transcript 2.5850 0.0000
7 ENSG00000201820 NA 2.4534 0.0000
8 ENSG00000240095 novel transcript 2.4154 0.0000
9 ENSG00000199525 RNA5SP295 RNA, 5S ribosomal pseudogene 295 2.3774 0.0000
10 ENSG00000181718 OR5T2 olfactory receptor family 5 subfamily T member 2 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000257829 novel transcript, antisense to KRT86 -2.4071 0.0000
63220 ENSG00000108256 NUFIP2 nuclear FMR1 interacting protein 2 -2.4070 0.0000
63219 ENSG00000266718 novel transcript, antisense MYO1D -2.4070 0.0000
63218 ENSG00000254461 novel transcript -2.4069 0.0000
63217 ENSG00000201145 RNA5SP175 RNA, 5S ribosomal pseudogene 175 -2.4067 0.0000
63216 ENSG00000004478 FKBP4 FKBP prolyl isomerase 4 -2.4063 0.0000
63215 ENSG00000197956 S100A6 S100 calcium binding protein A6 -2.4063 0.0000
63214 ENSG00000163629 PTPN13 protein tyrosine phosphatase non-receptor type 13 -2.4060 0.0000
63213 ENSG00000253767 PCDHGA8 protocadherin gamma subfamily A, 8 -2.4060 0.0000
63212 ENSG00000162676 GFI1 growth factor independent 1 transcriptional repressor -2.4059 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...