Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773573

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773573


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M200Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223744 RBMY2GP RNA binding motif protein Y-linked family 2 member G, pseudogene 3.1699 0.0000
2 ENSG00000214178 PPIAP23 peptidylprolyl isomerase A pseudogene 23 2.8074 0.0000
3 ENSG00000270524 QTRT1P1 queuine tRNA-ribosyltransferase catalytic subunit 1 pseudogene 1 2.8074 0.0000
4 ENSG00000212546 RNU6-995P RNA, U6 small nuclear 995, pseudogene 2.6455 0.0000
5 ENSG00000216859 DHFRP5 dihydrofolate reductase pseudogene 5 2.5850 0.0000
6 ENSG00000248773 novel transcript 2.5850 0.0000
7 ENSG00000201820 Y RNA 2.4534 0.0000
8 ENSG00000240095 novel transcript 2.4154 0.0000
9 ENSG00000199525 RNA5SP295 RNA, 5S ribosomal pseudogene 295 2.3774 0.0000
10 ENSG00000181718 OR5T2 olfactory receptor family 5 subfamily T member 2 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000178996 SNX18 sorting nexin 18 -2.3915 0.0000
63172 ENSG00000103035 PSMD7 proteasome 26S subunit, non-ATPase 7 -2.3913 0.0000
63171 ENSG00000218265 RPS4XP7 ribosomal protein S4X pseudogene 7 -2.3906 0.0000
63170 ENSG00000255096 OR5B10P olfactory receptor family 5 subfamily B member 10 pseudogene -2.3900 0.3891
63169 ENSG00000264408 MIR4470 microRNA 4470 -2.3895 0.0000
63168 ENSG00000213540 TXN2P1 TXN2 pseudogene 1 -2.3894 0.0000
63167 ENSG00000143443 C1orf56 chromosome 1 open reading frame 56 -2.3889 0.0000
63166 ENSG00000069275 NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 -2.3883 0.0000
63165 ENSG00000270036 novel transcript -2.3881 0.0000
63164 ENSG00000169083 AR androgen receptor -2.3881 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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