SHOGoiN Cell Methylome: GSM2773573
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773573 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M200 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000223744 | RBMY2GP | RNA binding motif protein, Y-linked, family 2, member G pseudogene | 3.1699 | 0.0000 |
| 2 | ENSG00000214178 | PPIAP23 | peptidylprolyl isomerase A pseudogene 23 | 2.8074 | 0.0000 |
| 3 | ENSG00000270524 | QTRT1P1 | queuine tRNA-ribosyltransferase catalytic subunit 1 pseudogene 1 | 2.8074 | 0.0000 |
| 4 | ENSG00000212546 | RNU6-995P | RNA, U6 small nuclear 995, pseudogene | 2.6455 | 0.0000 |
| 5 | ENSG00000216859 | DHFRP5 | dihydrofolate reductase pseudogene 5 | 2.5850 | 0.0000 |
| 6 | ENSG00000248773 | novel transcript | 2.5850 | 0.0000 | |
| 7 | ENSG00000201820 | NA | 2.4534 | 0.0000 | |
| 8 | ENSG00000240095 | novel transcript | 2.4154 | 0.0000 | |
| 9 | ENSG00000199525 | RNA5SP295 | RNA, 5S ribosomal pseudogene 295 | 2.3774 | 0.0000 |
| 10 | ENSG00000181718 | OR5T2 | olfactory receptor family 5 subfamily T member 2 | 2.3219 | 0.0002 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000228594 | FNDC10 | fibronectin type III domain containing 10 | -2.4679 | 0.0000 |
| 63340 | ENSG00000135469 | COQ10A | coenzyme Q10A | -2.4673 | 0.0000 |
| 63339 | ENSG00000188738 | FSIP2 | fibrous sheath interacting protein 2 | -2.4647 | 0.0000 |
| 63338 | ENSG00000238197 | PAXBP1-AS1 | PAXBP1 antisense RNA 1 | -2.4641 | 0.0000 |
| 63337 | ENSG00000228421 | novel transcript | -2.4638 | 0.0000 | |
| 63336 | ENSG00000214338 | SOGA3 | SOGA family member 3 | -2.4629 | 0.0000 |
| 63335 | ENSG00000150457 | LATS2 | large tumor suppressor kinase 2 | -2.4628 | 0.0000 |
| 63334 | ENSG00000234695 | novel transcript | -2.4627 | 0.0000 | |
| 63333 | ENSG00000134851 | TMEM165 | transmembrane protein 165 | -2.4623 | 0.0000 |
| 63332 | ENSG00000272086 | novel transcript | -2.4621 | 0.0000 |
