Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773573

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773573 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M200	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000223744	RBMY2GP	RNA binding motif protein Y-linked family 2 member G, pseudogene	3.1699	0.0000
2	ENSG00000214178	PPIAP23	peptidylprolyl isomerase A pseudogene 23	2.8074	0.0000
3	ENSG00000270524	QTRT1P1	queuine tRNA-ribosyltransferase catalytic subunit 1 pseudogene 1	2.8074	0.0000
4	ENSG00000212546	RNU6-995P	RNA, U6 small nuclear 995, pseudogene	2.6455	0.0000
5	ENSG00000216859	DHFRP5	dihydrofolate reductase pseudogene 5	2.5850	0.0000
6	ENSG00000248773		novel transcript	2.5850	0.0000
7	ENSG00000201820		Y RNA	2.4534	0.0000
8	ENSG00000240095		novel transcript	2.4154	0.0000
9	ENSG00000199525	RNA5SP295	RNA, 5S ribosomal pseudogene 295	2.3774	0.0000
10	ENSG00000181718	OR5T2	olfactory receptor family 5 subfamily T member 2	2.3219	0.0002

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000178996	SNX18	sorting nexin 18	-2.3915	0.0000
63172	ENSG00000103035	PSMD7	proteasome 26S subunit, non-ATPase 7	-2.3913	0.0000
63171	ENSG00000218265	RPS4XP7	ribosomal protein S4X pseudogene 7	-2.3906	0.0000
63170	ENSG00000255096	OR5B10P	olfactory receptor family 5 subfamily B member 10 pseudogene	-2.3900	0.3891
63169	ENSG00000264408	MIR4470	microRNA 4470	-2.3895	0.0000
63168	ENSG00000213540	TXN2P1	TXN2 pseudogene 1	-2.3894	0.0000
63167	ENSG00000143443	C1orf56	chromosome 1 open reading frame 56	-2.3889	0.0000
63166	ENSG00000069275	NUCKS1	nuclear casein kinase and cyclin dependent kinase substrate 1	-2.3883	0.0000
63165	ENSG00000270036		novel transcript	-2.3881	0.0000
63164	ENSG00000169083	AR	androgen receptor	-2.3881	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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