Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773573
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773573
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M200
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000223744
RBMY2GP
RNA binding motif protein Y-linked family 2 member G, pseudogene
3.1699
0.0000
2
ENSG00000214178
PPIAP23
peptidylprolyl isomerase A pseudogene 23
2.8074
0.0000
3
ENSG00000270524
QTRT1P1
queuine tRNA-ribosyltransferase catalytic subunit 1 pseudogene 1
2.8074
0.0000
4
ENSG00000212546
RNU6-995P
RNA, U6 small nuclear 995, pseudogene
2.6455
0.0000
5
ENSG00000216859
DHFRP5
dihydrofolate reductase pseudogene 5
2.5850
0.0000
6
ENSG00000248773
novel transcript
2.5850
0.0000
7
ENSG00000201820
Y RNA
2.4534
0.0000
8
ENSG00000240095
novel transcript
2.4154
0.0000
9
ENSG00000199525
RNA5SP295
RNA, 5S ribosomal pseudogene 295
2.3774
0.0000
10
ENSG00000181718
OR5T2
olfactory receptor family 5 subfamily T member 2
2.3219
0.0002
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000178996
SNX18
sorting nexin 18
-2.3915
0.0000
63172
ENSG00000103035
PSMD7
proteasome 26S subunit, non-ATPase 7
-2.3913
0.0000
63171
ENSG00000218265
RPS4XP7
ribosomal protein S4X pseudogene 7
-2.3906
0.0000
63170
ENSG00000255096
OR5B10P
olfactory receptor family 5 subfamily B member 10 pseudogene
-2.3900
0.3891
63169
ENSG00000264408
MIR4470
microRNA 4470
-2.3895
0.0000
63168
ENSG00000213540
TXN2P1
TXN2 pseudogene 1
-2.3894
0.0000
63167
ENSG00000143443
C1orf56
chromosome 1 open reading frame 56
-2.3889
0.0000
63166
ENSG00000069275
NUCKS1
nuclear casein kinase and cyclin dependent kinase substrate 1
-2.3883
0.0000
63165
ENSG00000270036
novel transcript
-2.3881
0.0000
63164
ENSG00000169083
AR
androgen receptor
-2.3881
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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