Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773573

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773573 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M200	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000223744	RBMY2GP	RNA binding motif protein Y-linked family 2 member G, pseudogene	3.1699	0.0000
2	ENSG00000214178	PPIAP23	peptidylprolyl isomerase A pseudogene 23	2.8074	0.0000
3	ENSG00000270524	QTRT1P1	queuine tRNA-ribosyltransferase catalytic subunit 1 pseudogene 1	2.8074	0.0000
4	ENSG00000212546	RNU6-995P	RNA, U6 small nuclear 995, pseudogene	2.6455	0.0000
5	ENSG00000216859	DHFRP5	dihydrofolate reductase pseudogene 5	2.5850	0.0000
6	ENSG00000248773		novel transcript	2.5850	0.0000
7	ENSG00000201820		NA	2.4534	0.0000
8	ENSG00000240095		novel transcript	2.4154	0.0000
9	ENSG00000199525	RNA5SP295	RNA, 5S ribosomal pseudogene 295	2.3774	0.0000
10	ENSG00000181718	OR5T2	olfactory receptor family 5 subfamily T member 2	2.3219	0.0002

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63221	ENSG00000257829		novel transcript, antisense to KRT86	-2.4071	0.0000
63220	ENSG00000108256	NUFIP2	nuclear FMR1 interacting protein 2	-2.4070	0.0000
63219	ENSG00000266718		novel transcript, antisense MYO1D	-2.4070	0.0000
63218	ENSG00000254461		novel transcript	-2.4069	0.0000
63217	ENSG00000201145	RNA5SP175	RNA, 5S ribosomal pseudogene 175	-2.4067	0.0000
63216	ENSG00000004478	FKBP4	FKBP prolyl isomerase 4	-2.4063	0.0000
63215	ENSG00000197956	S100A6	S100 calcium binding protein A6	-2.4063	0.0000
63214	ENSG00000163629	PTPN13	protein tyrosine phosphatase non-receptor type 13	-2.4060	0.0000
63213	ENSG00000253767	PCDHGA8	protocadherin gamma subfamily A, 8	-2.4060	0.0000
63212	ENSG00000162676	GFI1	growth factor independent 1 transcriptional repressor	-2.4059	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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