SHOGoiN Cell Methylome: GSM2773573

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773573


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M200Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223744 RBMY2GP RNA binding motif protein, Y-linked, family 2, member G pseudogene 3.1699 0.0000
2 ENSG00000214178 PPIAP23 peptidylprolyl isomerase A pseudogene 23 2.8074 0.0000
3 ENSG00000270524 QTRT1P1 queuine tRNA-ribosyltransferase catalytic subunit 1 pseudogene 1 2.8074 0.0000
4 ENSG00000212546 RNU6-995P RNA, U6 small nuclear 995, pseudogene 2.6455 0.0000
5 ENSG00000216859 DHFRP5 dihydrofolate reductase pseudogene 5 2.5850 0.0000
6 ENSG00000248773 novel transcript 2.5850 0.0000
7 ENSG00000201820 NA 2.4534 0.0000
8 ENSG00000240095 novel transcript 2.4154 0.0000
9 ENSG00000199525 RNA5SP295 RNA, 5S ribosomal pseudogene 295 2.3774 0.0000
10 ENSG00000181718 OR5T2 olfactory receptor family 5 subfamily T member 2 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000228594 FNDC10 fibronectin type III domain containing 10 -2.4679 0.0000
63340 ENSG00000135469 COQ10A coenzyme Q10A -2.4673 0.0000
63339 ENSG00000188738 FSIP2 fibrous sheath interacting protein 2 -2.4647 0.0000
63338 ENSG00000238197 PAXBP1-AS1 PAXBP1 antisense RNA 1 -2.4641 0.0000
63337 ENSG00000228421 novel transcript -2.4638 0.0000
63336 ENSG00000214338 SOGA3 SOGA family member 3 -2.4629 0.0000
63335 ENSG00000150457 LATS2 large tumor suppressor kinase 2 -2.4628 0.0000
63334 ENSG00000234695 novel transcript -2.4627 0.0000
63333 ENSG00000134851 TMEM165 transmembrane protein 165 -2.4623 0.0000
63332 ENSG00000272086 novel transcript -2.4621 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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