Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773574

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773574 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M201	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000255413		zinc finger protein 654 (ZNF654) pseudogene	2.5850	0.0001
2	ENSG00000258394		novel transcript, sense overlapping to a novel protein	2.5850	0.0001
3	ENSG00000279595		TEC	2.3774	0.0000
4	ENSG00000183432	ZBTB8OSP1	zinc finger and BTB domain containing 8 opposite strand pseudogene 1	2.3219	0.0005
5	ENSG00000200849		Y RNA	2.3219	0.0000
6	ENSG00000205412	HNRNPA1P20	heterogeneous nuclear ribonucleoprotein A1 pseudogene 20	2.3219	0.0000
7	ENSG00000224467	TANK-AS1	TANK antisense RNA 1	2.3219	0.0000
8	ENSG00000242560	RN7SL797P	RNA, 7SL, cytoplasmic 797, pseudogene	2.3219	0.0000
9	ENSG00000248770		mitochondrially encoded cytochrome c oxidase I (MT-COI) pseudogene	2.3219	0.0005
10	ENSG00000250839		mitochondrially encoded cytochrome c oxidase II (MT-CO2) pseudogene	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000199038	MIR210	microRNA 210	-2.0510	0.0000
63127	ENSG00000260519		novel transcript, antisense to ATP8A1	-2.0509	0.0000
63126	ENSG00000269956	MKNK1-AS1	MKNK1 antisense RNA 1	-2.0508	0.0000
63125	ENSG00000254231		novel transcript	-2.0506	0.0000
63124	ENSG00000198674	OR10G6	olfactory receptor family 10 subfamily G member 6	-2.0496	0.0000
63123	ENSG00000010803	SCMH1	Scm polycomb group protein homolog 1	-2.0496	0.0000
63122	ENSG00000274211	SOCS7	suppressor of cytokine signaling 7	-2.0495	0.0000
63121	ENSG00000101825	MXRA5	matrix remodeling associated 5	-2.0490	0.0000
63120	ENSG00000232630	PRPS1P2	phosphoribosyl pyrophosphate synthetase 1 pseudogene 2	-2.0490	0.0000
63119	ENSG00000228950		novel transcript	-2.0487	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...