SHOGoiN Cell Methylome: GSM2773574
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773574 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M201 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000255413 | zinc finger protein 654 (ZNF654) pseudogene | 2.5850 | 0.0001 | |
| 2 | ENSG00000258394 | novel transcript, sense overlapping to a novel protein | 2.5850 | 0.0001 | |
| 3 | ENSG00000279595 | TEC | 2.3774 | 0.0000 | |
| 4 | ENSG00000183432 | ZBTB8OSP1 | zinc finger and BTB domain containing 8 opposite strand pseudogene 1 | 2.3219 | 0.0005 |
| 5 | ENSG00000200849 | NA | 2.3219 | 0.0000 | |
| 6 | ENSG00000205412 | HNRNPA1P20 | heterogeneous nuclear ribonucleoprotein A1 pseudogene 20 | 2.3219 | 0.0000 |
| 7 | ENSG00000224467 | novel transcript | 2.3219 | 0.0000 | |
| 8 | ENSG00000242560 | RN7SL797P | RNA, 7SL, cytoplasmic 797, pseudogene | 2.3219 | 0.0000 |
| 9 | ENSG00000248770 | mitochondrially encoded cytochrome c oxidase I (MT-COI) pseudogene | 2.3219 | 0.0005 | |
| 10 | ENSG00000250839 | mitochondrially encoded cytochrome c oxidase II (MT-CO2) pseudogene | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000206920 | RNY1P6 | RNY1 pseudogene 6 | -2.1159 | 0.0000 |
| 63340 | ENSG00000148680 | HTR7 | 5-hydroxytryptamine receptor 7 | -2.1158 | 0.0000 |
| 63339 | ENSG00000138670 | RASGEF1B | RasGEF domain family member 1B | -2.1155 | 0.0000 |
| 63338 | ENSG00000196227 | FAM217B | family with sequence similarity 217 member B | -2.1153 | 0.0000 |
| 63337 | ENSG00000187135 | VSTM2B | V-set and transmembrane domain containing 2B | -2.1151 | 0.0000 |
| 63336 | ENSG00000132825 | PPP1R3D | protein phosphatase 1 regulatory subunit 3D | -2.1139 | 0.0000 |
| 63335 | ENSG00000279306 | novel transcript | -2.1136 | 0.0000 | |
| 63334 | ENSG00000156381 | ANKRD9 | ankyrin repeat domain 9 | -2.1132 | 0.0000 |
| 63333 | ENSG00000147676 | MAL2 | mal, T cell differentiation protein 2 (gene/pseudogene) | -2.1131 | 0.0000 |
| 63332 | ENSG00000102760 | RGCC | regulator of cell cycle | -2.1125 | 0.0000 |
