SHOGoiN Cell Methylome: GSM2773574

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773574


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M201Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255413 zinc finger protein 654 (ZNF654) pseudogene 2.5850 0.0001
2 ENSG00000258394 novel transcript, sense overlapping to a novel protein 2.5850 0.0001
3 ENSG00000279595 TEC 2.3774 0.0000
4 ENSG00000183432 ZBTB8OSP1 zinc finger and BTB domain containing 8 opposite strand pseudogene 1 2.3219 0.0005
5 ENSG00000200849 NA 2.3219 0.0000
6 ENSG00000205412 HNRNPA1P20 heterogeneous nuclear ribonucleoprotein A1 pseudogene 20 2.3219 0.0000
7 ENSG00000224467 novel transcript 2.3219 0.0000
8 ENSG00000242560 RN7SL797P RNA, 7SL, cytoplasmic 797, pseudogene 2.3219 0.0000
9 ENSG00000248770 mitochondrially encoded cytochrome c oxidase I (MT-COI) pseudogene 2.3219 0.0005
10 ENSG00000250839 mitochondrially encoded cytochrome c oxidase II (MT-CO2) pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000206920 RNY1P6 RNY1 pseudogene 6 -2.1159 0.0000
63340 ENSG00000148680 HTR7 5-hydroxytryptamine receptor 7 -2.1158 0.0000
63339 ENSG00000138670 RASGEF1B RasGEF domain family member 1B -2.1155 0.0000
63338 ENSG00000196227 FAM217B family with sequence similarity 217 member B -2.1153 0.0000
63337 ENSG00000187135 VSTM2B V-set and transmembrane domain containing 2B -2.1151 0.0000
63336 ENSG00000132825 PPP1R3D protein phosphatase 1 regulatory subunit 3D -2.1139 0.0000
63335 ENSG00000279306 novel transcript -2.1136 0.0000
63334 ENSG00000156381 ANKRD9 ankyrin repeat domain 9 -2.1132 0.0000
63333 ENSG00000147676 MAL2 mal, T cell differentiation protein 2 (gene/pseudogene) -2.1131 0.0000
63332 ENSG00000102760 RGCC regulator of cell cycle -2.1125 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...