Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773574
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773574
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M201
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000255413
zinc finger protein 654 (ZNF654) pseudogene
2.5850
0.0001
2
ENSG00000258394
novel transcript, sense overlapping to a novel protein
2.5850
0.0001
3
ENSG00000279595
TEC
2.3774
0.0000
4
ENSG00000183432
ZBTB8OSP1
zinc finger and BTB domain containing 8 opposite strand pseudogene 1
2.3219
0.0005
5
ENSG00000200849
Y RNA
2.3219
0.0000
6
ENSG00000205412
HNRNPA1P20
heterogeneous nuclear ribonucleoprotein A1 pseudogene 20
2.3219
0.0000
7
ENSG00000224467
TANK-AS1
TANK antisense RNA 1
2.3219
0.0000
8
ENSG00000242560
RN7SL797P
RNA, 7SL, cytoplasmic 797, pseudogene
2.3219
0.0000
9
ENSG00000248770
mitochondrially encoded cytochrome c oxidase I (MT-COI) pseudogene
2.3219
0.0005
10
ENSG00000250839
mitochondrially encoded cytochrome c oxidase II (MT-CO2) pseudogene
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000199038
MIR210
microRNA 210
-2.0510
0.0000
63127
ENSG00000260519
novel transcript, antisense to ATP8A1
-2.0509
0.0000
63126
ENSG00000269956
MKNK1-AS1
MKNK1 antisense RNA 1
-2.0508
0.0000
63125
ENSG00000254231
novel transcript
-2.0506
0.0000
63124
ENSG00000198674
OR10G6
olfactory receptor family 10 subfamily G member 6
-2.0496
0.0000
63123
ENSG00000010803
SCMH1
Scm polycomb group protein homolog 1
-2.0496
0.0000
63122
ENSG00000274211
SOCS7
suppressor of cytokine signaling 7
-2.0495
0.0000
63121
ENSG00000101825
MXRA5
matrix remodeling associated 5
-2.0490
0.0000
63120
ENSG00000232630
PRPS1P2
phosphoribosyl pyrophosphate synthetase 1 pseudogene 2
-2.0490
0.0000
63119
ENSG00000228950
novel transcript
-2.0487
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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