Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773575

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773575 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M202	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000259047		UDP glucuronosyltransferase 2 family, polypeptide B15 (UGT2B15) pseudogene	3.1699	0.0000
2	ENSG00000214784	RPS3AP21	RPS3A pseudogene 21	2.9154	0.0000
3	ENSG00000230418	ARL2BPP7	ADP ribosylation factor like GTPase 2 binding protein pseudogene 7	2.9037	0.0000
4	ENSG00000254913		novel transcript	2.6610	0.0000
5	ENSG00000202358	RNU6-652P	RNA, U6 small nuclear 652, pseudogene	2.3730	0.0000
6	ENSG00000183098	GPC6	glypican 6	2.3219	0.0004
7	ENSG00000265411	RN7SL656P	RNA, 7SL, cytoplasmic 656, pseudogene	2.3219	0.0000
8	ENSG00000219881	GAPDHP42	glyceraldehyde 3 phosphate dehydrogenase pseudogene 42	2.1073	0.0000
9	ENSG00000162630	B3GALT2	beta-1,3-galactosyltransferase 2	2.0000	0.0029
10	ENSG00000202283		NA	2.0000	0.0029

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000226920		novel transcript	-2.0096	0.0000
63127	ENSG00000273855		novel transcript, sense intronic to PLCB2	-2.0090	0.0000
63126	ENSG00000171004	HS6ST2	heparan sulfate 6-O-sulfotransferase 2	-2.0085	0.0000
63125	ENSG00000102871	TRADD	TNFRSF1A associated via death domain	-2.0080	0.0000
63124	ENSG00000277971		novel protein	-2.0080	0.0000
63123	ENSG00000198355	PIM3	Pim-3 proto-oncogene, serine/threonine kinase	-2.0079	0.0000
63122	ENSG00000064218	DMRT3	doublesex and mab-3 related transcription factor 3	-2.0078	0.0000
63121	ENSG00000278331	RNU6-156P	RNA, U6 small nuclear 156, pseudogene	-2.0077	0.0108
63120	ENSG00000196262	PPIA	peptidylprolyl isomerase A	-2.0074	0.0000
63119	ENSG00000232750		ribosomal protein S26 (RPS26) pseudogene	-2.0073	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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