SHOGoiN Cell Methylome: GSM2773575
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773575 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M202 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000259047 | UDP glucuronosyltransferase 2 family, polypeptide B15 (UGT2B15) pseudogene | 3.1699 | 0.0000 | |
| 2 | ENSG00000214784 | ribosomal protein S3A (RPS3A) pseudogene | 2.9154 | 0.0000 | |
| 3 | ENSG00000230418 | ARL2BPP7 | ADP ribosylation factor like GTPase 2 binding protein pseudogene 7 | 2.9037 | 0.0000 |
| 4 | ENSG00000254913 | novel transcript | 2.6610 | 0.0000 | |
| 5 | ENSG00000202358 | RNU6-652P | RNA, U6 small nuclear 652, pseudogene | 2.3730 | 0.0000 |
| 6 | ENSG00000183098 | GPC6 | glypican 6 | 2.3219 | 0.0004 |
| 7 | ENSG00000265411 | RN7SL656P | RNA, 7SL, cytoplasmic 656, pseudogene | 2.3219 | 0.0000 |
| 8 | ENSG00000219881 | GAPDHP42 | glyceraldehyde 3 phosphate dehydrogenase pseudogene 42 | 2.1073 | 0.0000 |
| 9 | ENSG00000162630 | B3GALT2 | beta-1,3-galactosyltransferase 2 | 2.0000 | 0.0029 |
| 10 | ENSG00000202283 | NA | 2.0000 | 0.0029 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000236311 | TLX1NB | TLX1 neighbor | -2.0813 | 0.0000 |
| 63340 | ENSG00000228300 | C19orf24 | chromosome 19 open reading frame 24 | -2.0813 | 0.0000 |
| 63339 | ENSG00000205213 | LGR4 | leucine rich repeat containing G protein-coupled receptor 4 | -2.0801 | 0.0000 |
| 63338 | ENSG00000230506 | novel transcript | -2.0800 | 0.0000 | |
| 63337 | ENSG00000212994 | RPS26P6 | ribosomal protein S26 pseudogene 6 | -2.0788 | 0.0000 |
| 63336 | ENSG00000183154 | novel transcript, antisense to ERLIN2 | -2.0787 | 0.0000 | |
| 63335 | ENSG00000253250 | C8orf88 | chromosome 8 open reading frame 88 | -2.0773 | 0.0000 |
| 63334 | ENSG00000224531 | SMIM13 | small integral membrane protein 13 | -2.0772 | 0.0000 |
| 63333 | ENSG00000207357 | RNU6-2 | RNA, U6 small nuclear 2 | -2.0764 | 0.0000 |
| 63332 | ENSG00000179580 | RNF151 | ring finger protein 151 | -2.0762 | 0.0000 |
