Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773575

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773575


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M202Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259047 UDP glucuronosyltransferase 2 family, polypeptide B15 (UGT2B15) pseudogene 3.1699 0.0000
2 ENSG00000214784 RPS3AP21 RPS3A pseudogene 21 2.9154 0.0000
3 ENSG00000230418 ARL2BPP7 ADP ribosylation factor like GTPase 2 binding protein pseudogene 7 2.9037 0.0000
4 ENSG00000254913 novel transcript 2.6610 0.0000
5 ENSG00000202358 RNU6-652P RNA, U6 small nuclear 652, pseudogene 2.3730 0.0000
6 ENSG00000183098 GPC6 glypican 6 2.3219 0.0004
7 ENSG00000265411 RN7SL656P RNA, 7SL, cytoplasmic 656, pseudogene 2.3219 0.0000
8 ENSG00000219881 GAPDHP42 glyceraldehyde 3 phosphate dehydrogenase pseudogene 42 2.1073 0.0000
9 ENSG00000162630 B3GALT2 beta-1,3-galactosyltransferase 2 2.0000 0.0029
10 ENSG00000202283 NA 2.0000 0.0029

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000226920 novel transcript -2.0096 0.0000
63127 ENSG00000273855 novel transcript, sense intronic to PLCB2 -2.0090 0.0000
63126 ENSG00000171004 HS6ST2 heparan sulfate 6-O-sulfotransferase 2 -2.0085 0.0000
63125 ENSG00000102871 TRADD TNFRSF1A associated via death domain -2.0080 0.0000
63124 ENSG00000277971 novel protein -2.0080 0.0000
63123 ENSG00000198355 PIM3 Pim-3 proto-oncogene, serine/threonine kinase -2.0079 0.0000
63122 ENSG00000064218 DMRT3 doublesex and mab-3 related transcription factor 3 -2.0078 0.0000
63121 ENSG00000278331 RNU6-156P RNA, U6 small nuclear 156, pseudogene -2.0077 0.0108
63120 ENSG00000196262 PPIA peptidylprolyl isomerase A -2.0074 0.0000
63119 ENSG00000232750 ribosomal protein S26 (RPS26) pseudogene -2.0073 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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