SHOGoiN Cell Methylome: GSM2773575

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773575


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M202Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259047 UDP glucuronosyltransferase 2 family, polypeptide B15 (UGT2B15) pseudogene 3.1699 0.0000
2 ENSG00000214784 ribosomal protein S3A (RPS3A) pseudogene 2.9154 0.0000
3 ENSG00000230418 ARL2BPP7 ADP ribosylation factor like GTPase 2 binding protein pseudogene 7 2.9037 0.0000
4 ENSG00000254913 novel transcript 2.6610 0.0000
5 ENSG00000202358 RNU6-652P RNA, U6 small nuclear 652, pseudogene 2.3730 0.0000
6 ENSG00000183098 GPC6 glypican 6 2.3219 0.0004
7 ENSG00000265411 RN7SL656P RNA, 7SL, cytoplasmic 656, pseudogene 2.3219 0.0000
8 ENSG00000219881 GAPDHP42 glyceraldehyde 3 phosphate dehydrogenase pseudogene 42 2.1073 0.0000
9 ENSG00000162630 B3GALT2 beta-1,3-galactosyltransferase 2 2.0000 0.0029
10 ENSG00000202283 NA 2.0000 0.0029

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000236311 TLX1NB TLX1 neighbor -2.0813 0.0000
63340 ENSG00000228300 C19orf24 chromosome 19 open reading frame 24 -2.0813 0.0000
63339 ENSG00000205213 LGR4 leucine rich repeat containing G protein-coupled receptor 4 -2.0801 0.0000
63338 ENSG00000230506 novel transcript -2.0800 0.0000
63337 ENSG00000212994 RPS26P6 ribosomal protein S26 pseudogene 6 -2.0788 0.0000
63336 ENSG00000183154 novel transcript, antisense to ERLIN2 -2.0787 0.0000
63335 ENSG00000253250 C8orf88 chromosome 8 open reading frame 88 -2.0773 0.0000
63334 ENSG00000224531 SMIM13 small integral membrane protein 13 -2.0772 0.0000
63333 ENSG00000207357 RNU6-2 RNA, U6 small nuclear 2 -2.0764 0.0000
63332 ENSG00000179580 RNF151 ring finger protein 151 -2.0762 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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