Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773575
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773575
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M202
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000259047
UDP glucuronosyltransferase 2 family, polypeptide B15 (UGT2B15) pseudogene
3.1699
0.0000
2
ENSG00000214784
RPS3AP21
RPS3A pseudogene 21
2.9154
0.0000
3
ENSG00000230418
ARL2BPP7
ADP ribosylation factor like GTPase 2 binding protein pseudogene 7
2.9037
0.0000
4
ENSG00000254913
novel transcript
2.6610
0.0000
5
ENSG00000202358
RNU6-652P
RNA, U6 small nuclear 652, pseudogene
2.3730
0.0000
6
ENSG00000183098
GPC6
glypican 6
2.3219
0.0004
7
ENSG00000265411
RN7SL656P
RNA, 7SL, cytoplasmic 656, pseudogene
2.3219
0.0000
8
ENSG00000219881
GAPDHP42
glyceraldehyde 3 phosphate dehydrogenase pseudogene 42
2.1073
0.0000
9
ENSG00000162630
B3GALT2
beta-1,3-galactosyltransferase 2
2.0000
0.0029
10
ENSG00000202283
NA
2.0000
0.0029
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000226920
novel transcript
-2.0096
0.0000
63127
ENSG00000273855
novel transcript, sense intronic to PLCB2
-2.0090
0.0000
63126
ENSG00000171004
HS6ST2
heparan sulfate 6-O-sulfotransferase 2
-2.0085
0.0000
63125
ENSG00000102871
TRADD
TNFRSF1A associated via death domain
-2.0080
0.0000
63124
ENSG00000277971
novel protein
-2.0080
0.0000
63123
ENSG00000198355
PIM3
Pim-3 proto-oncogene, serine/threonine kinase
-2.0079
0.0000
63122
ENSG00000064218
DMRT3
doublesex and mab-3 related transcription factor 3
-2.0078
0.0000
63121
ENSG00000278331
RNU6-156P
RNA, U6 small nuclear 156, pseudogene
-2.0077
0.0108
63120
ENSG00000196262
PPIA
peptidylprolyl isomerase A
-2.0074
0.0000
63119
ENSG00000232750
ribosomal protein S26 (RPS26) pseudogene
-2.0073
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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