Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773576

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773576


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M203Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000280317 TEC 2.5850 0.0000
2 ENSG00000231646 FSIP2-AS1 FSIP2 antisense RNA 1 2.3219 0.0004
3 ENSG00000237135 DDX10P1 DEAD-box helicase 10 pseudogene 1 2.3219 0.0004
4 ENSG00000238529 RNU6-599P RNA, U6 small nuclear 599, pseudogene 2.3219 0.0000
5 ENSG00000249936 RAC1P2 Rac family small GTPase 1 pseudogene 2 2.3219 0.0000
6 ENSG00000253078 RNU6-1116P RNA, U6 small nuclear 1116, pseudogene 2.3219 0.0000
7 ENSG00000272632 novel transcript 2.3219 0.0004
8 ENSG00000277306 NA 2.3219 0.0004
9 ENSG00000253532 novel transcript 2.2146 0.0000
10 ENSG00000259411 HNRNPA1P45 heterogeneous nuclear ribonucleoprotein A1 pseudogene 45 2.2034 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000166770 ZNF667-AS1 ZNF667 antisense RNA 1 (head to head) -2.0838 0.0000
63127 ENSG00000173818 ENDOV endonuclease V -2.0836 0.0000
63126 ENSG00000259488 novel transcript, antisense to DUT -2.0832 0.0000
63125 ENSG00000155903 RASA2 RAS p21 protein activator 2 -2.0831 0.0000
63124 ENSG00000270419 CAHM colon adenocarcinoma hypermethylated -2.0830 0.0000
63123 ENSG00000224980 RPL23AP85 ribosomal protein L23a pseudogene 85 -2.0828 0.0000
63122 ENSG00000283123 RARRES2P11 retinoic acid receptor responder 2 pseudogene 11 -2.0825 0.0000
63121 ENSG00000203321 CARNMT1-AS1 CARNMT1 antisense RNA 1 -2.0824 0.0000
63120 ENSG00000185863 TMEM210 transmembrane protein 210 -2.0824 0.0000
63119 ENSG00000271569 IGKV1OR2-6 immunoglobulin kappa variable 1/OR2-6 (pseudogene) -2.0823 0.0010

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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