SHOGoiN Cell Methylome: GSM2773577

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773577


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M204Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252553 RNA5SP73 RNA, 5S ribosomal pseudogene 73 2.3219 0.0000
2 ENSG00000229246 LINC00377 long intergenic non-protein coding RNA 377 2.0763 0.0000
3 ENSG00000273369 novel transcript, antisense to GUF1 2.0000 0.0041
4 ENSG00000261630 novel transcript, antisense to FTO 1.6250 0.0000
5 ENSG00000217874 OR4F7P olfactory receptor family 4 subfamily F member 7 pseudogene 1.5850 0.0254
6 ENSG00000224188 UBE2D3P4 ubiquitin conjugating enzyme E2 D3 pseudogene 4 1.5850 0.0254
7 ENSG00000229208 RBMY2NP RNA binding motif protein, Y-linked, family 2, member N pseudogene 1.5850 0.0254
8 ENSG00000234289 H2BFS H2B histone family member S 1.5850 0.0254
9 ENSG00000248339 LINC02504 long intergenic non-protein coding RNA 2504 1.5850 0.0254
10 ENSG00000263189 Zinc finger protein pseudogene 1.4633 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000172458 IL17D interleukin 17D -1.9930 0.0000
63340 ENSG00000214330 ABCD1P5 ATP binding cassette subfamily D member 1 pseudogene 5 -1.9924 0.0000
63339 ENSG00000228300 C19orf24 chromosome 19 open reading frame 24 -1.9921 0.0000
63338 ENSG00000135439 AGAP2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 -1.9920 0.0000
63337 ENSG00000259368 novel transcript, antisense to DISP2 -1.9914 0.0000
63336 ENSG00000245719 novel transcript -1.9913 0.0000
63335 ENSG00000152402 GUCY1A2 guanylate cyclase 1 soluble subunit alpha 2 -1.9911 0.0000
63334 ENSG00000197858 GPAA1 glycosylphosphatidylinositol anchor attachment 1 -1.9909 0.0000
63333 ENSG00000259173 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G (ATP5L) pseudogene -1.9907 0.0000
63332 ENSG00000006555 TTC22 tetratricopeptide repeat domain 22 -1.9906 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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