Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773577

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773577


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M204Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252553 RNA5SP73 RNA, 5S ribosomal pseudogene 73 2.3219 0.0000
2 ENSG00000229246 LINC00377 long intergenic non-protein coding RNA 377 2.0763 0.0000
3 ENSG00000273369 novel transcript, antisense to GUF1 2.0000 0.0041
4 ENSG00000261630 novel transcript, antisense to FTO 1.6250 0.0000
5 ENSG00000217874 OR4F7P olfactory receptor family 4 subfamily F member 7 pseudogene 1.5850 0.0254
6 ENSG00000224188 UBE2D3P4 ubiquitin conjugating enzyme E2 D3 pseudogene 4 1.5850 0.0254
7 ENSG00000229208 RBMY2NP RNA binding motif protein Y-linked family 2 member N, pseudogene 1.5850 0.0254
8 ENSG00000234289 H2BS1 H2B.S histone 1 1.5850 0.0254
9 ENSG00000248339 LINC02504 long intergenic non-protein coding RNA 2504 1.5850 0.0254
10 ENSG00000263189 Zinc finger protein pseudogene 1.4633 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000116962 NID1 nidogen 1 -1.9406 0.0000
63127 ENSG00000164764 SBSPON somatomedin B and thrombospondin type 1 domain containing -1.9405 0.0000
63126 ENSG00000244280 ECEL1P2 endothelin converting enzyme like 1 pseudogene 2 -1.9405 0.0000
63125 ENSG00000241745 RN7SL788P RNA, 7SL, cytoplasmic 788, pseudogene -1.9399 0.0000
63124 ENSG00000162004 CCDC78 coiled-coil domain containing 78 -1.9396 0.0000
63123 ENSG00000279726 novel transcript, antisense to PCDHA5, PCDHA4, PCDHA3, PCDHA2 and PCDHA1 -1.9395 0.0000
63122 ENSG00000226479 TMEM185B transmembrane protein 185B -1.9393 0.0000
63121 ENSG00000157833 GAREM2 GRB2 associated regulator of MAPK1 subtype 2 -1.9392 0.0000
63120 ENSG00000204969 PCDHA2 protocadherin alpha 2 -1.9392 0.0000
63119 ENSG00000262772 LINC01977 long intergenic non-protein coding RNA 1977 -1.9392 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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