SHOGoiN Cell Methylome: GSM2773578

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773578


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M205Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000186124 OR9M1P olfactory receptor family 9 subfamily M member 1, pseudogene 1.5850 0.0302
2 ENSG00000207476 RNU6-286P RNA, U6 small nuclear 286, pseudogene 1.5850 0.0302
3 ENSG00000231762 novel pseudogene 1.5850 0.0302
4 ENSG00000242097 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) (GALNT1) pseudogene 1.5850 0.0009
5 ENSG00000248735 R3HDM2P1 R3H domain containing 2 pseudogene 1 1.5850 0.0000
6 ENSG00000259798 novel transcript HYDIN 1.5850 0.0302
7 ENSG00000277306 NA 1.5850 0.0009
8 ENSG00000278008 PPP1R26P4 protein phosphatase 1 regulatory subunit 26 pseudogene 4 1.5850 0.0302
63332 ENSG00000260681 novel transcript, antisense to TMC5 -1.6052 0.0000
63333 ENSG00000170604 IRF2BP1 interferon regulatory factor 2 binding protein 1 -1.6055 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000279751 novel transcript -1.6082 0.0000
63340 ENSG00000130193 THEM6 thioesterase superfamily member 6 -1.6080 0.0000
63339 ENSG00000261659 novel transcript, antisense to FBXL16 -1.6079 0.0000
63338 ENSG00000167705 RILP Rab interacting lysosomal protein -1.6077 0.0000
63337 ENSG00000273472 novel transcript -1.6070 0.0000
63336 ENSG00000255808 novel transcript -1.6060 0.0000
63335 ENSG00000144354 CDCA7 cell division cycle associated 7 -1.6058 0.0000
63334 ENSG00000275793 RIMBP3 RIMS binding protein 3 -1.6055 0.0000
63333 ENSG00000170604 IRF2BP1 interferon regulatory factor 2 binding protein 1 -1.6055 0.0000
63332 ENSG00000260681 novel transcript, antisense to TMC5 -1.6052 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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