Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773578
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773578
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M205
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000186124
OR9M1P
olfactory receptor family 9 subfamily M member 1, pseudogene
1.5850
0.0302
2
ENSG00000207476
RNU6-286P
RNA, U6 small nuclear 286, pseudogene
1.5850
0.0302
3
ENSG00000231762
novel pseudogene
1.5850
0.0302
4
ENSG00000242097
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) (GALNT1) pseudogene
1.5850
0.0009
5
ENSG00000248735
R3HDM2P1
R3H domain containing 2 pseudogene 1
1.5850
0.0000
6
ENSG00000259798
novel transcript HYDIN
1.5850
0.0302
7
ENSG00000277306
NA
1.5850
0.0009
8
ENSG00000278008
PPP1R26P4
protein phosphatase 1 regulatory subunit 26 pseudogene 4
1.5850
0.0302
63119
ENSG00000279030
novel transcript
-1.5676
0.0000
63120
ENSG00000119801
YPEL5
yippee like 5
-1.5676
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000258122
novel transcript, antisense to CA7
-1.5685
0.0000
63127
ENSG00000228013
IL6R-AS1
IL6R antisense RNA 1
-1.5684
0.0000
63126
ENSG00000142961
MOB3C
MOB kinase activator 3C
-1.5683
0.0000
63125
ENSG00000269956
MKNK1-AS1
MKNK1 antisense RNA 1
-1.5683
0.0000
63124
ENSG00000148704
VAX1
ventral anterior homeobox 1
-1.5682
0.0000
63123
ENSG00000254791
FAR1-IT1
FAR1 intronic transcript 1
-1.5681
0.0000
63122
ENSG00000275836
MIR6068
microRNA 6068
-1.5677
0.0000
63121
ENSG00000243926
TIPARP-AS1
TIPARP antisense RNA 1
-1.5677
0.0000
63120
ENSG00000119801
YPEL5
yippee like 5
-1.5676
0.0000
63119
ENSG00000279030
novel transcript
-1.5676
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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