SHOGoiN Cell Methylome: GSM2773578
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773578 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M205 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000186124 | OR9M1P | olfactory receptor family 9 subfamily M member 1, pseudogene | 1.5850 | 0.0302 |
| 2 | ENSG00000207476 | RNU6-286P | RNA, U6 small nuclear 286, pseudogene | 1.5850 | 0.0302 |
| 3 | ENSG00000231762 | novel pseudogene | 1.5850 | 0.0302 | |
| 4 | ENSG00000242097 | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) (GALNT1) pseudogene | 1.5850 | 0.0009 | |
| 5 | ENSG00000248735 | R3HDM2P1 | R3H domain containing 2 pseudogene 1 | 1.5850 | 0.0000 |
| 6 | ENSG00000259798 | novel transcript HYDIN | 1.5850 | 0.0302 | |
| 7 | ENSG00000277306 | NA | 1.5850 | 0.0009 | |
| 8 | ENSG00000278008 | PPP1R26P4 | protein phosphatase 1 regulatory subunit 26 pseudogene 4 | 1.5850 | 0.0302 |
| 63332 | ENSG00000260681 | novel transcript, antisense to TMC5 | -1.6052 | 0.0000 | |
| 63333 | ENSG00000170604 | IRF2BP1 | interferon regulatory factor 2 binding protein 1 | -1.6055 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000279751 | novel transcript | -1.6082 | 0.0000 | |
| 63340 | ENSG00000130193 | THEM6 | thioesterase superfamily member 6 | -1.6080 | 0.0000 |
| 63339 | ENSG00000261659 | novel transcript, antisense to FBXL16 | -1.6079 | 0.0000 | |
| 63338 | ENSG00000167705 | RILP | Rab interacting lysosomal protein | -1.6077 | 0.0000 |
| 63337 | ENSG00000273472 | novel transcript | -1.6070 | 0.0000 | |
| 63336 | ENSG00000255808 | novel transcript | -1.6060 | 0.0000 | |
| 63335 | ENSG00000144354 | CDCA7 | cell division cycle associated 7 | -1.6058 | 0.0000 |
| 63334 | ENSG00000275793 | RIMBP3 | RIMS binding protein 3 | -1.6055 | 0.0000 |
| 63333 | ENSG00000170604 | IRF2BP1 | interferon regulatory factor 2 binding protein 1 | -1.6055 | 0.0000 |
| 63332 | ENSG00000260681 | novel transcript, antisense to TMC5 | -1.6052 | 0.0000 |
