Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773578

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773578 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M205	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000186124	OR9M1P	olfactory receptor family 9 subfamily M member 1, pseudogene	1.5850	0.0302
2	ENSG00000207476	RNU6-286P	RNA, U6 small nuclear 286, pseudogene	1.5850	0.0302
3	ENSG00000231762		novel pseudogene	1.5850	0.0302
4	ENSG00000242097		UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) (GALNT1) pseudogene	1.5850	0.0009
5	ENSG00000248735	R3HDM2P1	R3H domain containing 2 pseudogene 1	1.5850	0.0000
6	ENSG00000259798		novel transcript HYDIN	1.5850	0.0302
7	ENSG00000277306		NA	1.5850	0.0009
8	ENSG00000278008	PPP1R26P4	protein phosphatase 1 regulatory subunit 26 pseudogene 4	1.5850	0.0302
63119	ENSG00000279030		novel transcript	-1.5676	0.0000
63120	ENSG00000119801	YPEL5	yippee like 5	-1.5676	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000258122		novel transcript, antisense to CA7	-1.5685	0.0000
63127	ENSG00000228013	IL6R-AS1	IL6R antisense RNA 1	-1.5684	0.0000
63126	ENSG00000142961	MOB3C	MOB kinase activator 3C	-1.5683	0.0000
63125	ENSG00000269956	MKNK1-AS1	MKNK1 antisense RNA 1	-1.5683	0.0000
63124	ENSG00000148704	VAX1	ventral anterior homeobox 1	-1.5682	0.0000
63123	ENSG00000254791	FAR1-IT1	FAR1 intronic transcript 1	-1.5681	0.0000
63122	ENSG00000275836	MIR6068	microRNA 6068	-1.5677	0.0000
63121	ENSG00000243926	TIPARP-AS1	TIPARP antisense RNA 1	-1.5677	0.0000
63120	ENSG00000119801	YPEL5	yippee like 5	-1.5676	0.0000
63119	ENSG00000279030		novel transcript	-1.5676	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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