Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773578

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773578


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M205Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000186124 OR9M1P olfactory receptor family 9 subfamily M member 1, pseudogene 1.5850 0.0302
2 ENSG00000207476 RNU6-286P RNA, U6 small nuclear 286, pseudogene 1.5850 0.0302
3 ENSG00000231762 novel pseudogene 1.5850 0.0302
4 ENSG00000242097 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) (GALNT1) pseudogene 1.5850 0.0009
5 ENSG00000248735 R3HDM2P1 R3H domain containing 2 pseudogene 1 1.5850 0.0000
6 ENSG00000259798 novel transcript HYDIN 1.5850 0.0302
7 ENSG00000277306 NA 1.5850 0.0009
8 ENSG00000278008 PPP1R26P4 protein phosphatase 1 regulatory subunit 26 pseudogene 4 1.5850 0.0302
63119 ENSG00000279030 novel transcript -1.5676 0.0000
63120 ENSG00000119801 YPEL5 yippee like 5 -1.5676 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000258122 novel transcript, antisense to CA7 -1.5685 0.0000
63127 ENSG00000228013 IL6R-AS1 IL6R antisense RNA 1 -1.5684 0.0000
63126 ENSG00000142961 MOB3C MOB kinase activator 3C -1.5683 0.0000
63125 ENSG00000269956 MKNK1-AS1 MKNK1 antisense RNA 1 -1.5683 0.0000
63124 ENSG00000148704 VAX1 ventral anterior homeobox 1 -1.5682 0.0000
63123 ENSG00000254791 FAR1-IT1 FAR1 intronic transcript 1 -1.5681 0.0000
63122 ENSG00000275836 MIR6068 microRNA 6068 -1.5677 0.0000
63121 ENSG00000243926 TIPARP-AS1 TIPARP antisense RNA 1 -1.5677 0.0000
63120 ENSG00000119801 YPEL5 yippee like 5 -1.5676 0.0000
63119 ENSG00000279030 novel transcript -1.5676 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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