Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773579
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773579
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M206
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000165246
NLGN4Y
neuroligin 4 Y-linked
3.1699
0.0000
2
ENSG00000226068
HNRNPA3P4
heterogeneous nuclear ribonucleoprotein A3 pseudogene 4
3.1699
0.0000
3
ENSG00000271934
OR2AS2P
olfactory receptor family 2 subfamily AS member 2 pseudogene
3.0000
0.0000
4
ENSG00000263199
myosin, light chain 12-like, regulatory pseudogene
2.8074
0.0000
5
ENSG00000229359
PIN1P1
peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1
2.7436
0.0000
6
ENSG00000182010
RTKN2
rhotekin 2
2.5850
0.0000
7
ENSG00000202395
RN7SKP1
RN7SK pseudogene 1
2.5850
0.0000
8
ENSG00000279264
tec
2.5850
0.0000
9
ENSG00000201950
SNORD113-9
small nucleolar RNA, C/D box 113-9
2.3219
0.0002
10
ENSG00000207656
MIR489
microRNA 489
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000128594
LRRC4
leucine rich repeat containing 4
-1.9539
0.0000
63127
ENSG00000137462
TLR2
toll like receptor 2
-1.9538
0.0277
63126
ENSG00000139370
SLC15A4
solute carrier family 15 member 4
-1.9537
0.0000
63125
ENSG00000124257
NEURL2
neuralized E3 ubiquitin protein ligase 2
-1.9536
0.0000
63124
ENSG00000272815
novel transcript
-1.9534
1.0000
63123
ENSG00000266129
SRP68P1
signal recognition particle 68 pseudogene 1
-1.9534
1.0000
63122
ENSG00000259117
WD repeat and SOCS box containing 2 (WSB2) pseudogene
-1.9534
1.0000
63121
ENSG00000252364
RNA5SP360
RNA, 5S ribosomal pseudogene 360
-1.9534
0.3824
63120
ENSG00000251168
novel transcript
-1.9534
1.0000
63119
ENSG00000242729
ribosomal protein L9 (RPL9) pseudogene
-1.9534
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...