SHOGoiN Cell Methylome: GSM2773579
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773579 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M206 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000165246 | NLGN4Y | neuroligin 4 Y-linked | 3.1699 | 0.0000 |
| 2 | ENSG00000226068 | HNRNPA3P4 | heterogeneous nuclear ribonucleoprotein A3 pseudogene 4 | 3.1699 | 0.0000 |
| 3 | ENSG00000271934 | OR2AS2P | olfactory receptor family 2 subfamily AS member 2 pseudogene | 3.0000 | 0.0000 |
| 4 | ENSG00000263199 | myosin, light chain 12-like, regulatory pseudogene | 2.8074 | 0.0000 | |
| 5 | ENSG00000229359 | PIN1P1 | peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 | 2.7436 | 0.0000 |
| 6 | ENSG00000182010 | RTKN2 | rhotekin 2 | 2.5850 | 0.0000 |
| 7 | ENSG00000202395 | RN7SKP1 | RN7SK pseudogene 1 | 2.5850 | 0.0000 |
| 8 | ENSG00000279264 | tec | 2.5850 | 0.0000 | |
| 9 | ENSG00000201950 | SNORD113-9 | small nucleolar RNA, C/D box 113-9 | 2.3219 | 0.0002 |
| 10 | ENSG00000207656 | MIR489 | microRNA 489 | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000242766 | IGKV1D-17 | immunoglobulin kappa variable 1D-17 | -2.0000 | 1.0000 |
| 63340 | ENSG00000240298 | RPL36AP40 | ribosomal protein L36a pseudogene 40 | -2.0000 | 0.3824 |
| 63339 | ENSG00000240179 | RPL26P3 | ribosomal protein L26 pseudogene 3 | -2.0000 | 0.2431 |
| 63338 | ENSG00000240138 | EEF1GP4 | eukaryotic translation elongation factor 1 gamma pseudogene 4 | -2.0000 | 1.0000 |
| 63337 | ENSG00000239504 | RN7SL583P | RNA, 7SL, cytoplasmic 583, pseudogene | -2.0000 | 1.0000 |
| 63336 | ENSG00000237735 | novel transcript | -2.0000 | 0.6113 | |
| 63335 | ENSG00000237628 | MTCO2P19 | MT-CO2 pseudogene 19 | -2.0000 | 0.3824 |
| 63334 | ENSG00000237302 | OFD1P11Y | OFD1 pseudogene 11 Y-linked | -2.0000 | 1.0000 |
| 63333 | ENSG00000237300 | MTCO1P19 | MT-CO1 pseudogene 19 | -2.0000 | 0.3824 |
| 63332 | ENSG00000236761 | CTAGE9 | CTAGE family member 9 | -2.0000 | 1.0000 |
