Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773579

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773579


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M206Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000165246 NLGN4Y neuroligin 4 Y-linked 3.1699 0.0000
2 ENSG00000226068 HNRNPA3P4 heterogeneous nuclear ribonucleoprotein A3 pseudogene 4 3.1699 0.0000
3 ENSG00000271934 OR2AS2P olfactory receptor family 2 subfamily AS member 2 pseudogene 3.0000 0.0000
4 ENSG00000263199 myosin, light chain 12-like, regulatory pseudogene 2.8074 0.0000
5 ENSG00000229359 PIN1P1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 2.7436 0.0000
6 ENSG00000182010 RTKN2 rhotekin 2 2.5850 0.0000
7 ENSG00000202395 RN7SKP1 RN7SK pseudogene 1 2.5850 0.0000
8 ENSG00000279264 tec 2.5850 0.0000
9 ENSG00000201950 SNORD113-9 small nucleolar RNA, C/D box 113-9 2.3219 0.0002
10 ENSG00000207656 MIR489 microRNA 489 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000128594 LRRC4 leucine rich repeat containing 4 -1.9539 0.0000
63127 ENSG00000137462 TLR2 toll like receptor 2 -1.9538 0.0277
63126 ENSG00000139370 SLC15A4 solute carrier family 15 member 4 -1.9537 0.0000
63125 ENSG00000124257 NEURL2 neuralized E3 ubiquitin protein ligase 2 -1.9536 0.0000
63124 ENSG00000272815 novel transcript -1.9534 1.0000
63123 ENSG00000266129 SRP68P1 signal recognition particle 68 pseudogene 1 -1.9534 1.0000
63122 ENSG00000259117 WD repeat and SOCS box containing 2 (WSB2) pseudogene -1.9534 1.0000
63121 ENSG00000252364 RNA5SP360 RNA, 5S ribosomal pseudogene 360 -1.9534 0.3824
63120 ENSG00000251168 novel transcript -1.9534 1.0000
63119 ENSG00000242729 ribosomal protein L9 (RPL9) pseudogene -1.9534 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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