Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773579

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773579 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M206	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000165246	NLGN4Y	neuroligin 4 Y-linked	3.1699	0.0000
2	ENSG00000226068	HNRNPA3P4	heterogeneous nuclear ribonucleoprotein A3 pseudogene 4	3.1699	0.0000
3	ENSG00000271934	OR2AS2P	olfactory receptor family 2 subfamily AS member 2 pseudogene	3.0000	0.0000
4	ENSG00000263199		myosin, light chain 12-like, regulatory pseudogene	2.8074	0.0000
5	ENSG00000229359	PIN1P1	peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1	2.7436	0.0000
6	ENSG00000182010	RTKN2	rhotekin 2	2.5850	0.0000
7	ENSG00000202395	RN7SKP1	RN7SK pseudogene 1	2.5850	0.0000
8	ENSG00000279264		tec	2.5850	0.0000
9	ENSG00000201950	SNORD113-9	small nucleolar RNA, C/D box 113-9	2.3219	0.0002
10	ENSG00000207656	MIR489	microRNA 489	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000128594	LRRC4	leucine rich repeat containing 4	-1.9539	0.0000
63127	ENSG00000137462	TLR2	toll like receptor 2	-1.9538	0.0277
63126	ENSG00000139370	SLC15A4	solute carrier family 15 member 4	-1.9537	0.0000
63125	ENSG00000124257	NEURL2	neuralized E3 ubiquitin protein ligase 2	-1.9536	0.0000
63124	ENSG00000272815		novel transcript	-1.9534	1.0000
63123	ENSG00000266129	SRP68P1	signal recognition particle 68 pseudogene 1	-1.9534	1.0000
63122	ENSG00000259117		WD repeat and SOCS box containing 2 (WSB2) pseudogene	-1.9534	1.0000
63121	ENSG00000252364	RNA5SP360	RNA, 5S ribosomal pseudogene 360	-1.9534	0.3824
63120	ENSG00000251168		novel transcript	-1.9534	1.0000
63119	ENSG00000242729		ribosomal protein L9 (RPL9) pseudogene	-1.9534	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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