SHOGoiN Cell Methylome: GSM2773579

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773579


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M206Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000165246 NLGN4Y neuroligin 4 Y-linked 3.1699 0.0000
2 ENSG00000226068 HNRNPA3P4 heterogeneous nuclear ribonucleoprotein A3 pseudogene 4 3.1699 0.0000
3 ENSG00000271934 OR2AS2P olfactory receptor family 2 subfamily AS member 2 pseudogene 3.0000 0.0000
4 ENSG00000263199 myosin, light chain 12-like, regulatory pseudogene 2.8074 0.0000
5 ENSG00000229359 PIN1P1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 2.7436 0.0000
6 ENSG00000182010 RTKN2 rhotekin 2 2.5850 0.0000
7 ENSG00000202395 RN7SKP1 RN7SK pseudogene 1 2.5850 0.0000
8 ENSG00000279264 tec 2.5850 0.0000
9 ENSG00000201950 SNORD113-9 small nucleolar RNA, C/D box 113-9 2.3219 0.0002
10 ENSG00000207656 MIR489 microRNA 489 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000242766 IGKV1D-17 immunoglobulin kappa variable 1D-17 -2.0000 1.0000
63340 ENSG00000240298 RPL36AP40 ribosomal protein L36a pseudogene 40 -2.0000 0.3824
63339 ENSG00000240179 RPL26P3 ribosomal protein L26 pseudogene 3 -2.0000 0.2431
63338 ENSG00000240138 EEF1GP4 eukaryotic translation elongation factor 1 gamma pseudogene 4 -2.0000 1.0000
63337 ENSG00000239504 RN7SL583P RNA, 7SL, cytoplasmic 583, pseudogene -2.0000 1.0000
63336 ENSG00000237735 novel transcript -2.0000 0.6113
63335 ENSG00000237628 MTCO2P19 MT-CO2 pseudogene 19 -2.0000 0.3824
63334 ENSG00000237302 OFD1P11Y OFD1 pseudogene 11 Y-linked -2.0000 1.0000
63333 ENSG00000237300 MTCO1P19 MT-CO1 pseudogene 19 -2.0000 0.3824
63332 ENSG00000236761 CTAGE9 CTAGE family member 9 -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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