SHOGoiN Cell Methylome: GSM2773580

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773580


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M207Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000182854 OR4F15 olfactory receptor family 4 subfamily F member 15 3.0000 0.0000
2 ENSG00000251552 COQ10BP2 coenzyme Q10B pseudogene 2 2.9886 0.0000
3 ENSG00000221206 RNU6ATAC15P RNA, U6atac small nuclear 15, pseudogene 2.5850 0.0003
4 ENSG00000253951 chaperonin containing TCP1, subunit 3 (gamma) (CCT3) pseudogene 2.5850 0.0003
5 ENSG00000264564 chromosome 18 open reading frame 26 (C18orf26) pseudogene 2.5850 0.0003
6 ENSG00000202339 RNU4-45P RNA, U4 small nuclear 45, pseudogene 2.3219 0.0014
7 ENSG00000251586 TET2-AS1 TET2 antisense RNA 1 2.3219 0.0000
8 ENSG00000272489 novel transcript 2.3219 0.0014
9 ENSG00000276672 novel transcript, sense intronic to RFC3 2.3219 0.0000
10 ENSG00000278967 novel transcript 2.2049 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000183615 FAM167B family with sequence similarity 167 member B -1.8926 0.0000
63340 ENSG00000170935 NCBP2L nuclear cap binding protein subunit 2 like -1.8926 0.0000
63339 ENSG00000162627 SNX7 sorting nexin 7 -1.8921 0.0000
63338 ENSG00000241651 ribosomal protein L15 (RPL15) pseudogene -1.8921 0.0000
63337 ENSG00000131094 C1QL1 complement C1q like 1 -1.8916 0.0000
63336 ENSG00000283635 novel transcript, antisense to PER2 -1.8913 0.0000
63335 ENSG00000231702 ribosomal protein L39 (RPL39) pseudogene -1.8911 0.0000
63334 ENSG00000085382 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 -1.8909 0.0000
63333 ENSG00000258317 novel transcript, antisense to ZC3H10 and ESYT1 -1.8908 0.0000
63332 ENSG00000252034 RNY4P37 RNY4 pseudogene 37 -1.8906 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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