Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773580

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773580


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M207Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000182854 OR4F15 olfactory receptor family 4 subfamily F member 15 3.0000 0.0000
2 ENSG00000251552 COQ10BP2 coenzyme Q10B pseudogene 2 2.9886 0.0000
3 ENSG00000221206 RNU6ATAC15P RNA, U6atac small nuclear 15, pseudogene 2.5850 0.0003
4 ENSG00000253951 CCT3P1 chaperonin containing TCP1 subunit 3 pseudogene 1 2.5850 0.0003
5 ENSG00000264564 chromosome 18 open reading frame 26 (C18orf26) pseudogene 2.5850 0.0003
6 ENSG00000202339 RNU4-45P RNA, U4 small nuclear 45, pseudogene 2.3219 0.0014
7 ENSG00000251586 TET2-AS1 TET2 antisense RNA 1 2.3219 0.0000
8 ENSG00000272489 novel transcript 2.3219 0.0014
9 ENSG00000276672 novel transcript, sense intronic to RFC3 2.3219 0.0000
10 ENSG00000278967 novel transcript 2.2049 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000197977 ELOVL2 ELOVL fatty acid elongase 2 -1.8329 0.0000
63127 ENSG00000101230 ISM1 isthmin 1 -1.8318 0.0000
63126 ENSG00000163421 PROK2 prokineticin 2 -1.8318 0.0000
63125 ENSG00000223648 IGHV3-64 immunoglobulin heavy variable 3-64 -1.8316 0.0000
63124 ENSG00000105880 DLX5 distal-less homeobox 5 -1.8316 0.0000
63123 ENSG00000260053 ABCB10P4 ABCB10 pseudogene 4 -1.8314 0.0000
63122 ENSG00000204791 SMPD5 sphingomyelin phosphodiesterase 5 (pseudogene) -1.8307 0.0000
63121 ENSG00000258311 novel protein -1.8307 0.0000
63120 ENSG00000204053 MYCLP1 MYCL pseudogene 1 -1.8304 0.0000
63119 ENSG00000142279 WTIP WT1 interacting protein -1.8301 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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