SHOGoiN Cell Methylome: GSM2773581
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773581 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M208 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000280136 | novel transcript | 2.5432 | 0.0000 | |
| 2 | ENSG00000251340 | MTCYBP35 | MT-CYB pseudogene 35 | 2.5421 | 0.0000 |
| 3 | ENSG00000247627 | MTND4P12 | MT-ND4 pseudogene 12 | 2.5061 | 0.0000 |
| 4 | ENSG00000263963 | NA | 2.5061 | 0.0000 | |
| 5 | ENSG00000198868 | MTND4LP30 | MT-ND4L pseudogene 30 | 2.4455 | 0.0000 |
| 6 | ENSG00000249192 | MTND3P25 | MT-ND3 pseudogene 25 | 2.4317 | 0.0000 |
| 7 | ENSG00000275664 | NA | 2.4032 | 0.0000 | |
| 8 | ENSG00000275950 | MIR6724-1 | microRNA 6724-1 | 2.4032 | 0.0000 |
| 9 | ENSG00000254132 | MTND6P3 | MT-ND6 pseudogene 3 | 2.3986 | 0.0000 |
| 10 | ENSG00000248923 | MTND5P11 | MT-ND5 pseudogene 11 | 2.3838 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63340 | ENSG00000274893 | novel transcript | -1.0000 | 0.0000 | |
| 63339 | ENSG00000274663 | RNA5SP526 | RNA, 5S ribosomal pseudogene 526 | -1.0000 | 0.0001 |
| 63338 | ENSG00000274583 | FAM74A4 | family with sequence similarity 74 member A4 | -1.0000 | 0.0023 |
| 63337 | ENSG00000274516 | FAM74A6 | family with sequence similarity 74 member A6 | -1.0000 | 0.0886 |
| 63336 | ENSG00000274487 | aminopeptidase puromycin sensitive (NPEPPS) pseudogene | -1.0000 | 0.0000 | |
| 63335 | ENSG00000274424 | RN7SL196P | RNA, 7SL, cytoplasmic 196, pseudogene | -1.0000 | 0.0264 |
| 63334 | ENSG00000274265 | novel transcript | -1.0000 | 0.0000 | |
| 63333 | ENSG00000274162 | SNX18P1Y | sorting nexin 18 pseudogene 1, Y-linked | -1.0000 | 0.0886 |
| 63332 | ENSG00000273907 | CA15P2 | CA15 pseudogene 2 | -1.0000 | 0.0000 |
| 10 | ENSG00000248923 | MTND5P11 | MT-ND5 pseudogene 11 | 2.3838 | 0.0000 |
