Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773581

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773581


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M208Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000280136 novel transcript 2.5432 0.0000
2 ENSG00000251340 MTCYBP35 MT-CYB pseudogene 35 2.5421 0.0000
3 ENSG00000247627 MTND4P12 MT-ND4 pseudogene 12 2.5061 0.0000
4 ENSG00000263963 NA 2.5061 0.0000
5 ENSG00000198868 MTND4LP30 MT-ND4L pseudogene 30 2.4455 0.0000
6 ENSG00000249192 MTND3P25 MT-ND3 pseudogene 25 2.4317 0.0000
7 ENSG00000275664 NA 2.4032 0.0000
8 ENSG00000275950 MIR6724-1 microRNA 6724-1 2.4032 0.0000
9 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.3986 0.0000
10 ENSG00000248923 MTND5P11 MT-ND5 pseudogene 11 2.3838 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000213599 SLX1A-SULT1A3 SLX1A-SULT1A3 readthrough (NMD candidate) -1.0000 0.0000
63127 ENSG00000213578 CPLX3 complexin 3 -1.0000 0.0079
63126 ENSG00000213371 NAP1L1P3 nucleosome assembly protein 1 like 1 pseudogene 3 -1.0000 0.0886
63125 ENSG00000213231 TCL1B TCL1 family AKT coactivator B -1.0000 0.0264
63124 ENSG00000213184 SUMO-1 activating enzyme subunit 1 (SAE1) pseudogene -1.0000 0.0000
63123 ENSG00000213147 RPL23AP60 ribosomal protein L23a pseudogene 60 -1.0000 0.2977
63122 ENSG00000213030 CGB8 chorionic gonadotropin subunit beta 8 -1.0000 0.0000
63121 ENSG00000211661 IGLV3-22 immunoglobulin lambda variable 3-22 -1.0000 0.0000
63120 ENSG00000211660 IGLV2-23 immunoglobulin lambda variable 2-23 -1.0000 0.0002
63119 ENSG00000211652 IGLV7-43 immunoglobulin lambda variable 7-43 -1.0000 0.0007

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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