Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773581

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773581 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M208	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000280136		novel transcript	2.5432	0.0000
2	ENSG00000251340	MTCYBP35	MT-CYB pseudogene 35	2.5421	0.0000
3	ENSG00000247627	MTND4P12	MT-ND4 pseudogene 12	2.5061	0.0000
4	ENSG00000263963		NA	2.5061	0.0000
5	ENSG00000198868	MTND4LP30	MT-ND4L pseudogene 30	2.4455	0.0000
6	ENSG00000249192	MTND3P25	MT-ND3 pseudogene 25	2.4317	0.0000
7	ENSG00000275664		NA	2.4032	0.0000
8	ENSG00000275950	MIR6724-1	microRNA 6724-1	2.4032	0.0000
9	ENSG00000254132	MTND6P3	MT-ND6 pseudogene 3	2.3986	0.0000
10	ENSG00000248923	MTND5P11	MT-ND5 pseudogene 11	2.3838	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000213599	SLX1A-SULT1A3	SLX1A-SULT1A3 readthrough (NMD candidate)	-1.0000	0.0000
63127	ENSG00000213578	CPLX3	complexin 3	-1.0000	0.0079
63126	ENSG00000213371	NAP1L1P3	nucleosome assembly protein 1 like 1 pseudogene 3	-1.0000	0.0886
63125	ENSG00000213231	TCL1B	TCL1 family AKT coactivator B	-1.0000	0.0264
63124	ENSG00000213184		SUMO-1 activating enzyme subunit 1 (SAE1) pseudogene	-1.0000	0.0000
63123	ENSG00000213147	RPL23AP60	ribosomal protein L23a pseudogene 60	-1.0000	0.2977
63122	ENSG00000213030	CGB8	chorionic gonadotropin subunit beta 8	-1.0000	0.0000
63121	ENSG00000211661	IGLV3-22	immunoglobulin lambda variable 3-22	-1.0000	0.0000
63120	ENSG00000211660	IGLV2-23	immunoglobulin lambda variable 2-23	-1.0000	0.0002
63119	ENSG00000211652	IGLV7-43	immunoglobulin lambda variable 7-43	-1.0000	0.0007

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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