SHOGoiN Cell Methylome: GSM2773581

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773581


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M208Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000280136 novel transcript 2.5432 0.0000
2 ENSG00000251340 MTCYBP35 MT-CYB pseudogene 35 2.5421 0.0000
3 ENSG00000247627 MTND4P12 MT-ND4 pseudogene 12 2.5061 0.0000
4 ENSG00000263963 NA 2.5061 0.0000
5 ENSG00000198868 MTND4LP30 MT-ND4L pseudogene 30 2.4455 0.0000
6 ENSG00000249192 MTND3P25 MT-ND3 pseudogene 25 2.4317 0.0000
7 ENSG00000275664 NA 2.4032 0.0000
8 ENSG00000275950 MIR6724-1 microRNA 6724-1 2.4032 0.0000
9 ENSG00000254132 MTND6P3 MT-ND6 pseudogene 3 2.3986 0.0000
10 ENSG00000248923 MTND5P11 MT-ND5 pseudogene 11 2.3838 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63340 ENSG00000274893 novel transcript -1.0000 0.0000
63339 ENSG00000274663 RNA5SP526 RNA, 5S ribosomal pseudogene 526 -1.0000 0.0001
63338 ENSG00000274583 FAM74A4 family with sequence similarity 74 member A4 -1.0000 0.0023
63337 ENSG00000274516 FAM74A6 family with sequence similarity 74 member A6 -1.0000 0.0886
63336 ENSG00000274487 aminopeptidase puromycin sensitive (NPEPPS) pseudogene -1.0000 0.0000
63335 ENSG00000274424 RN7SL196P RNA, 7SL, cytoplasmic 196, pseudogene -1.0000 0.0264
63334 ENSG00000274265 novel transcript -1.0000 0.0000
63333 ENSG00000274162 SNX18P1Y sorting nexin 18 pseudogene 1, Y-linked -1.0000 0.0886
63332 ENSG00000273907 CA15P2 CA15 pseudogene 2 -1.0000 0.0000
10 ENSG00000248923 MTND5P11 MT-ND5 pseudogene 11 2.3838 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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