Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773581
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773581
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M208
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000280136
novel transcript
2.5432
0.0000
2
ENSG00000251340
MTCYBP35
MT-CYB pseudogene 35
2.5421
0.0000
3
ENSG00000247627
MTND4P12
MT-ND4 pseudogene 12
2.5061
0.0000
4
ENSG00000263963
NA
2.5061
0.0000
5
ENSG00000198868
MTND4LP30
MT-ND4L pseudogene 30
2.4455
0.0000
6
ENSG00000249192
MTND3P25
MT-ND3 pseudogene 25
2.4317
0.0000
7
ENSG00000275664
NA
2.4032
0.0000
8
ENSG00000275950
MIR6724-1
microRNA 6724-1
2.4032
0.0000
9
ENSG00000254132
MTND6P3
MT-ND6 pseudogene 3
2.3986
0.0000
10
ENSG00000248923
MTND5P11
MT-ND5 pseudogene 11
2.3838
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000213599
SLX1A-SULT1A3
SLX1A-SULT1A3 readthrough (NMD candidate)
-1.0000
0.0000
63127
ENSG00000213578
CPLX3
complexin 3
-1.0000
0.0079
63126
ENSG00000213371
NAP1L1P3
nucleosome assembly protein 1 like 1 pseudogene 3
-1.0000
0.0886
63125
ENSG00000213231
TCL1B
TCL1 family AKT coactivator B
-1.0000
0.0264
63124
ENSG00000213184
SUMO-1 activating enzyme subunit 1 (SAE1) pseudogene
-1.0000
0.0000
63123
ENSG00000213147
RPL23AP60
ribosomal protein L23a pseudogene 60
-1.0000
0.2977
63122
ENSG00000213030
CGB8
chorionic gonadotropin subunit beta 8
-1.0000
0.0000
63121
ENSG00000211661
IGLV3-22
immunoglobulin lambda variable 3-22
-1.0000
0.0000
63120
ENSG00000211660
IGLV2-23
immunoglobulin lambda variable 2-23
-1.0000
0.0002
63119
ENSG00000211652
IGLV7-43
immunoglobulin lambda variable 7-43
-1.0000
0.0007
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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