Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773582

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773582 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M209	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000150732		novel zinc finger protein pseudogene	2.6924	0.0000
2	ENSG00000212358	RNU6-837P	RNA, U6 small nuclear 837, pseudogene	2.5850	0.0001
3	ENSG00000253472		mediator complex subunit 13 (MED13) pseudogene	2.4096	0.0000
4	ENSG00000188558	OR2G6	olfactory receptor family 2 subfamily G member 6	2.3219	0.0000
5	ENSG00000259781	HMGB1P6	high mobility group box 1 pseudogene 6	2.3219	0.0006
6	ENSG00000253425	HSPA8P13	heat shock protein family A (Hsp70) member 8 pseudogene 13	2.1887	0.0000
7	ENSG00000202191	SNORD113-1	small nucleolar RNA, C/D box 113-1	2.1610	0.0000
8	ENSG00000212384	SNORD113-2	small nucleolar RNA, C/D box 113-2	2.1610	0.0000
9	ENSG00000267565		novel transcript, antisense to ZNF253	2.1610	0.0000
10	ENSG00000243122		ribosomal protein S15 (RPS15) pseudogene	2.0431	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000203668	CHML	CHM like Rab escort protein	-1.8872	0.0000
63127	ENSG00000162073	PAQR4	progestin and adipoQ receptor family member 4	-1.8870	0.0000
63126	ENSG00000280026		novel transcript, antisense to PCDHGB1	-1.8869	0.0000
63125	ENSG00000226191	CLK3P2	CDC like kinase 3 pseudogene 2	-1.8866	0.0000
63124	ENSG00000224830	OR2X1P	olfactory receptor family 2 subfamily X member 1 pseudogene	-1.8866	0.0000
63123	ENSG00000278946		novel transcript, antisense to PCDHA10	-1.8866	0.0000
63122	ENSG00000197273	GUCA2A	guanylate cyclase activator 2A	-1.8865	0.0000
63121	ENSG00000276223		novel transcript, sense intronic to KCNK15	-1.8862	0.0000
63120	ENSG00000266188		NA	-1.8858	0.0000
63119	ENSG00000105700	KXD1	KxDL motif containing 1	-1.8854	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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