Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773582
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773582
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M209
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000150732
novel zinc finger protein pseudogene
2.6924
0.0000
2
ENSG00000212358
RNU6-837P
RNA, U6 small nuclear 837, pseudogene
2.5850
0.0001
3
ENSG00000253472
mediator complex subunit 13 (MED13) pseudogene
2.4096
0.0000
4
ENSG00000188558
OR2G6
olfactory receptor family 2 subfamily G member 6
2.3219
0.0000
5
ENSG00000259781
HMGB1P6
high mobility group box 1 pseudogene 6
2.3219
0.0006
6
ENSG00000253425
HSPA8P13
heat shock protein family A (Hsp70) member 8 pseudogene 13
2.1887
0.0000
7
ENSG00000202191
SNORD113-1
small nucleolar RNA, C/D box 113-1
2.1610
0.0000
8
ENSG00000212384
SNORD113-2
small nucleolar RNA, C/D box 113-2
2.1610
0.0000
9
ENSG00000267565
novel transcript, antisense to ZNF253
2.1610
0.0000
10
ENSG00000243122
ribosomal protein S15 (RPS15) pseudogene
2.0431
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000203668
CHML
CHM like Rab escort protein
-1.8872
0.0000
63127
ENSG00000162073
PAQR4
progestin and adipoQ receptor family member 4
-1.8870
0.0000
63126
ENSG00000280026
novel transcript, antisense to PCDHGB1
-1.8869
0.0000
63125
ENSG00000226191
CLK3P2
CDC like kinase 3 pseudogene 2
-1.8866
0.0000
63124
ENSG00000224830
OR2X1P
olfactory receptor family 2 subfamily X member 1 pseudogene
-1.8866
0.0000
63123
ENSG00000278946
novel transcript, antisense to PCDHA10
-1.8866
0.0000
63122
ENSG00000197273
GUCA2A
guanylate cyclase activator 2A
-1.8865
0.0000
63121
ENSG00000276223
novel transcript, sense intronic to KCNK15
-1.8862
0.0000
63120
ENSG00000266188
NA
-1.8858
0.0000
63119
ENSG00000105700
KXD1
KxDL motif containing 1
-1.8854
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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