SHOGoiN Cell Methylome: GSM2773582
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773582 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M209 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000150732 | novel zinc finger protein pseudogene | 2.6924 | 0.0000 | |
| 2 | ENSG00000212358 | RNU6-837P | RNA, U6 small nuclear 837, pseudogene | 2.5850 | 0.0001 |
| 3 | ENSG00000253472 | mediator complex subunit 13 (MED13) pseudogene | 2.4096 | 0.0000 | |
| 4 | ENSG00000188558 | OR2G6 | olfactory receptor family 2 subfamily G member 6 | 2.3219 | 0.0000 |
| 5 | ENSG00000259781 | HMGB1P6 | high mobility group box 1 pseudogene 6 | 2.3219 | 0.0006 |
| 6 | ENSG00000253425 | HSPA8P13 | heat shock protein family A (Hsp70) member 8 pseudogene 13 | 2.1887 | 0.0000 |
| 7 | ENSG00000202191 | SNORD113-1 | small nucleolar RNA, C/D box 113-1 | 2.1610 | 0.0000 |
| 8 | ENSG00000212384 | SNORD113-2 | small nucleolar RNA, C/D box 113-2 | 2.1610 | 0.0000 |
| 9 | ENSG00000267565 | novel transcript, antisense to ZNF253 | 2.1610 | 0.0000 | |
| 10 | ENSG00000243122 | ribosomal protein S15 (RPS15) pseudogene | 2.0431 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000169740 | ZNF32 | zinc finger protein 32 | -1.9621 | 0.0000 |
| 63340 | ENSG00000259305 | ZHX1-C8orf76 | ZHX1-C8orf76 readthrough | -1.9617 | 0.0000 |
| 63339 | ENSG00000225407 | novel transcript, antisense to F2R | -1.9600 | 0.0000 | |
| 63338 | ENSG00000185386 | MAPK11 | mitogen-activated protein kinase 11 | -1.9597 | 0.0000 |
| 63337 | ENSG00000264655 | PPIAP54 | peptidylprolyl isomerase A pseudogene 54 | -1.9594 | 0.0000 |
| 63336 | ENSG00000233905 | LONRF2P2 | LON peptidase N-terminal domain and ring finger 2 pseudogene 2 | -1.9576 | 0.0000 |
| 63335 | ENSG00000125816 | NKX2-4 | NK2 homeobox 4 | -1.9566 | 0.0000 |
| 63334 | ENSG00000225675 | LINC01771 | long intergenic non-protein coding RNA 1771 | -1.9564 | 0.0000 |
| 63333 | ENSG00000212807 | OR2A42 | olfactory receptor family 2 subfamily A member 42 | -1.9563 | 0.0011 |
| 63332 | ENSG00000278484 | novel transcript | -1.9551 | 0.0000 |
