Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773582

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773582


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M209Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000150732 novel zinc finger protein pseudogene 2.6924 0.0000
2 ENSG00000212358 RNU6-837P RNA, U6 small nuclear 837, pseudogene 2.5850 0.0001
3 ENSG00000253472 mediator complex subunit 13 (MED13) pseudogene 2.4096 0.0000
4 ENSG00000188558 OR2G6 olfactory receptor family 2 subfamily G member 6 2.3219 0.0000
5 ENSG00000259781 HMGB1P6 high mobility group box 1 pseudogene 6 2.3219 0.0006
6 ENSG00000253425 HSPA8P13 heat shock protein family A (Hsp70) member 8 pseudogene 13 2.1887 0.0000
7 ENSG00000202191 SNORD113-1 small nucleolar RNA, C/D box 113-1 2.1610 0.0000
8 ENSG00000212384 SNORD113-2 small nucleolar RNA, C/D box 113-2 2.1610 0.0000
9 ENSG00000267565 novel transcript, antisense to ZNF253 2.1610 0.0000
10 ENSG00000243122 ribosomal protein S15 (RPS15) pseudogene 2.0431 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000203668 CHML CHM like Rab escort protein -1.8872 0.0000
63127 ENSG00000162073 PAQR4 progestin and adipoQ receptor family member 4 -1.8870 0.0000
63126 ENSG00000280026 novel transcript, antisense to PCDHGB1 -1.8869 0.0000
63125 ENSG00000226191 CLK3P2 CDC like kinase 3 pseudogene 2 -1.8866 0.0000
63124 ENSG00000224830 OR2X1P olfactory receptor family 2 subfamily X member 1 pseudogene -1.8866 0.0000
63123 ENSG00000278946 novel transcript, antisense to PCDHA10 -1.8866 0.0000
63122 ENSG00000197273 GUCA2A guanylate cyclase activator 2A -1.8865 0.0000
63121 ENSG00000276223 novel transcript, sense intronic to KCNK15 -1.8862 0.0000
63120 ENSG00000266188 NA -1.8858 0.0000
63119 ENSG00000105700 KXD1 KxDL motif containing 1 -1.8854 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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