SHOGoiN Cell Methylome: GSM2773582

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773582


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M209Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000150732 novel zinc finger protein pseudogene 2.6924 0.0000
2 ENSG00000212358 RNU6-837P RNA, U6 small nuclear 837, pseudogene 2.5850 0.0001
3 ENSG00000253472 mediator complex subunit 13 (MED13) pseudogene 2.4096 0.0000
4 ENSG00000188558 OR2G6 olfactory receptor family 2 subfamily G member 6 2.3219 0.0000
5 ENSG00000259781 HMGB1P6 high mobility group box 1 pseudogene 6 2.3219 0.0006
6 ENSG00000253425 HSPA8P13 heat shock protein family A (Hsp70) member 8 pseudogene 13 2.1887 0.0000
7 ENSG00000202191 SNORD113-1 small nucleolar RNA, C/D box 113-1 2.1610 0.0000
8 ENSG00000212384 SNORD113-2 small nucleolar RNA, C/D box 113-2 2.1610 0.0000
9 ENSG00000267565 novel transcript, antisense to ZNF253 2.1610 0.0000
10 ENSG00000243122 ribosomal protein S15 (RPS15) pseudogene 2.0431 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000169740 ZNF32 zinc finger protein 32 -1.9621 0.0000
63340 ENSG00000259305 ZHX1-C8orf76 ZHX1-C8orf76 readthrough -1.9617 0.0000
63339 ENSG00000225407 novel transcript, antisense to F2R -1.9600 0.0000
63338 ENSG00000185386 MAPK11 mitogen-activated protein kinase 11 -1.9597 0.0000
63337 ENSG00000264655 PPIAP54 peptidylprolyl isomerase A pseudogene 54 -1.9594 0.0000
63336 ENSG00000233905 LONRF2P2 LON peptidase N-terminal domain and ring finger 2 pseudogene 2 -1.9576 0.0000
63335 ENSG00000125816 NKX2-4 NK2 homeobox 4 -1.9566 0.0000
63334 ENSG00000225675 LINC01771 long intergenic non-protein coding RNA 1771 -1.9564 0.0000
63333 ENSG00000212807 OR2A42 olfactory receptor family 2 subfamily A member 42 -1.9563 0.0011
63332 ENSG00000278484 novel transcript -1.9551 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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