Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773583

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773583


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M210Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000273804 phospholipase A2, group X (PLA2G10) pseudogene 2.8074 0.0000
2 ENSG00000225384 pseudogene similar to part of poly(A) polymerase alpha (PAPOLA) 2.5850 0.0002
3 ENSG00000233876 GAPDHP68 glyceraldehyde 3 phosphate dehydrogenase pseudogene 68 2.3219 0.0000
4 ENSG00000237569 TUBAP tubulin alpha pseudogene 2.3219 0.0012
5 ENSG00000240354 novel transcript 2.3219 0.0012
6 ENSG00000270339 PPIAL4H peptidylprolyl isomerase A like 4H 2.3219 0.0012
7 ENSG00000274615 aminopeptidase puromycin sensitive (NPEPPS) pseudogene 2.3219 0.0000
8 ENSG00000279190 novel transcript 2.3219 0.0012
9 ENSG00000266931 required for meiotic nuclear division 5 homolog A (S. cerevisiae) (RMND5A) pseudogene 2.3137 0.0000
10 ENSG00000221355 MIR1288 microRNA 1288 2.2516 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000250243 novel transcript -1.9326 0.0000
63220 ENSG00000250913 USP17L23 ubiquitin specific peptidase 17 like family member 23 -1.9321 0.0000
63219 ENSG00000247796 novel transcript, antisense to MOCS2 -1.9321 0.0000
63218 ENSG00000265670 novel transcript -1.9320 0.0508
63217 ENSG00000101883 RHOXF1 Rhox homeobox family member 1 -1.9319 0.0000
63216 ENSG00000261575 C17orf58 pseudogene -1.9314 0.0000
63215 ENSG00000258651 SEC23A-AS1 SEC23A antisense RNA 1 -1.9312 0.0000
63214 ENSG00000161179 YDJC YdjC chitooligosaccharide deacetylase homolog -1.9310 0.0000
63213 ENSG00000241293 PPATP1 phosphoribosyl pyrophosphate amidotransferase pseudogene 1 -1.9308 0.0015
63212 ENSG00000240624 ribosomal protein L17 (RPL17) pseudogene -1.9308 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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