SHOGoiN Cell Methylome: GSM2773583

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773583


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M210Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000273804 phospholipase A2, group X (PLA2G10) pseudogene 2.8074 0.0000
2 ENSG00000225384 pseudogene similar to part of poly(A) polymerase alpha (PAPOLA) 2.5850 0.0002
3 ENSG00000233876 GAPDHP68 glyceraldehyde 3 phosphate dehydrogenase pseudogene 68 2.3219 0.0000
4 ENSG00000237569 TUBAP tubulin alpha pseudogene 2.3219 0.0012
5 ENSG00000240354 novel transcript 2.3219 0.0012
6 ENSG00000270339 PPIAL4H peptidylprolyl isomerase A like 4H 2.3219 0.0012
7 ENSG00000274615 aminopeptidase puromycin sensitive (NPEPPS) pseudogene 2.3219 0.0000
8 ENSG00000279190 novel transcript 2.3219 0.0012
9 ENSG00000266931 required for meiotic nuclear division 5 homolog A (S. cerevisiae) (RMND5A) pseudogene 2.3137 0.0000
10 ENSG00000221355 MIR1288 microRNA 1288 2.2516 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000267783 novel transcript, antisense to ASF1B -1.9713 0.0000
63340 ENSG00000130204 TOMM40 translocase of outer mitochondrial membrane 40 -1.9711 0.0000
63339 ENSG00000108813 DLX4 distal-less homeobox 4 -1.9710 0.0000
63338 ENSG00000238197 PAXBP1-AS1 PAXBP1 antisense RNA 1 -1.9699 0.0000
63337 ENSG00000247993 FOXD1-AS1 FOXD1 antisense RNA 1 -1.9699 0.0000
63336 ENSG00000151650 VENTX VENT homeobox -1.9697 0.0000
63335 ENSG00000259410 novel transcript -1.9690 0.0000
63334 ENSG00000258080 ARHGAP42P4 Rho GTPase activating protein 42 pseudogene 4 -1.9690 0.0001
63333 ENSG00000253810 PSAT1P1 phosphoserine aminotransferase 1 pseudogene 1 -1.9690 0.3815
63332 ENSG00000233728 novel transcript -1.9689 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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