Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773583

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773583


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M210Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000273804 phospholipase A2, group X (PLA2G10) pseudogene 2.8074 0.0000
2 ENSG00000225384 pseudogene similar to part of poly(A) polymerase alpha (PAPOLA) 2.5850 0.0002
3 ENSG00000233876 GAPDHP68 glyceraldehyde 3 phosphate dehydrogenase pseudogene 68 2.3219 0.0000
4 ENSG00000237569 TUBAP1 tubulin alpha pseudogene 1 2.3219 0.0012
5 ENSG00000240354 novel transcript 2.3219 0.0012
6 ENSG00000270339 PPIAL4H peptidylprolyl isomerase A like 4H 2.3219 0.0012
7 ENSG00000274615 aminopeptidase puromycin sensitive (NPEPPS) pseudogene 2.3219 0.0000
8 ENSG00000279190 novel transcript 2.3219 0.0012
9 ENSG00000266931 required for meiotic nuclear division 5 homolog A (S. cerevisiae) (RMND5A) pseudogene 2.3137 0.0000
10 ENSG00000221355 MIR1288 microRNA 1288 2.2516 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000104044 OCA2 OCA2 melanosomal transmembrane protein -1.9219 0.0000
63172 ENSG00000202474 RNA5SP283 RNA, 5S ribosomal pseudogene 283 -1.9218 0.0000
63171 ENSG00000185002 RFX6 regulatory factor X6 -1.9216 0.0000
63170 ENSG00000254122 PCDHGB7 protocadherin gamma subfamily B, 7 -1.9214 0.0000
63169 ENSG00000112309 B3GAT2 beta-1,3-glucuronyltransferase 2 -1.9211 0.0000
63168 ENSG00000259721 novel transcript -1.9208 0.0000
63167 ENSG00000138622 HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 -1.9205 0.0000
63166 ENSG00000172572 PDE3A phosphodiesterase 3A -1.9201 0.0000
63165 ENSG00000264063 NA -1.9201 0.0000
63164 ENSG00000050030 NEXMIF neurite extension and migration factor -1.9199 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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