Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773583

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773583 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M210	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000273804		phospholipase A2, group X (PLA2G10) pseudogene	2.8074	0.0000
2	ENSG00000225384		pseudogene similar to part of poly(A) polymerase alpha (PAPOLA)	2.5850	0.0002
3	ENSG00000233876	GAPDHP68	glyceraldehyde 3 phosphate dehydrogenase pseudogene 68	2.3219	0.0000
4	ENSG00000237569	TUBAP1	tubulin alpha pseudogene 1	2.3219	0.0012
5	ENSG00000240354		novel transcript	2.3219	0.0012
6	ENSG00000270339	PPIAL4H	peptidylprolyl isomerase A like 4H	2.3219	0.0012
7	ENSG00000274615		aminopeptidase puromycin sensitive (NPEPPS) pseudogene	2.3219	0.0000
8	ENSG00000279190		novel transcript	2.3219	0.0012
9	ENSG00000266931		required for meiotic nuclear division 5 homolog A (S. cerevisiae) (RMND5A) pseudogene	2.3137	0.0000
10	ENSG00000221355	MIR1288	microRNA 1288	2.2516	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000104044	OCA2	OCA2 melanosomal transmembrane protein	-1.9219	0.0000
63172	ENSG00000202474	RNA5SP283	RNA, 5S ribosomal pseudogene 283	-1.9218	0.0000
63171	ENSG00000185002	RFX6	regulatory factor X6	-1.9216	0.0000
63170	ENSG00000254122	PCDHGB7	protocadherin gamma subfamily B, 7	-1.9214	0.0000
63169	ENSG00000112309	B3GAT2	beta-1,3-glucuronyltransferase 2	-1.9211	0.0000
63168	ENSG00000259721		novel transcript	-1.9208	0.0000
63167	ENSG00000138622	HCN4	hyperpolarization activated cyclic nucleotide gated potassium channel 4	-1.9205	0.0000
63166	ENSG00000172572	PDE3A	phosphodiesterase 3A	-1.9201	0.0000
63165	ENSG00000264063		NA	-1.9201	0.0000
63164	ENSG00000050030	NEXMIF	neurite extension and migration factor	-1.9199	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...