SHOGoiN Cell Methylome: GSM2773583
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773583 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M210 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000273804 | phospholipase A2, group X (PLA2G10) pseudogene | 2.8074 | 0.0000 | |
| 2 | ENSG00000225384 | pseudogene similar to part of poly(A) polymerase alpha (PAPOLA) | 2.5850 | 0.0002 | |
| 3 | ENSG00000233876 | GAPDHP68 | glyceraldehyde 3 phosphate dehydrogenase pseudogene 68 | 2.3219 | 0.0000 |
| 4 | ENSG00000237569 | TUBAP | tubulin alpha pseudogene | 2.3219 | 0.0012 |
| 5 | ENSG00000240354 | novel transcript | 2.3219 | 0.0012 | |
| 6 | ENSG00000270339 | PPIAL4H | peptidylprolyl isomerase A like 4H | 2.3219 | 0.0012 |
| 7 | ENSG00000274615 | aminopeptidase puromycin sensitive (NPEPPS) pseudogene | 2.3219 | 0.0000 | |
| 8 | ENSG00000279190 | novel transcript | 2.3219 | 0.0012 | |
| 9 | ENSG00000266931 | required for meiotic nuclear division 5 homolog A (S. cerevisiae) (RMND5A) pseudogene | 2.3137 | 0.0000 | |
| 10 | ENSG00000221355 | MIR1288 | microRNA 1288 | 2.2516 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000267783 | novel transcript, antisense to ASF1B | -1.9713 | 0.0000 | |
| 63340 | ENSG00000130204 | TOMM40 | translocase of outer mitochondrial membrane 40 | -1.9711 | 0.0000 |
| 63339 | ENSG00000108813 | DLX4 | distal-less homeobox 4 | -1.9710 | 0.0000 |
| 63338 | ENSG00000238197 | PAXBP1-AS1 | PAXBP1 antisense RNA 1 | -1.9699 | 0.0000 |
| 63337 | ENSG00000247993 | FOXD1-AS1 | FOXD1 antisense RNA 1 | -1.9699 | 0.0000 |
| 63336 | ENSG00000151650 | VENTX | VENT homeobox | -1.9697 | 0.0000 |
| 63335 | ENSG00000259410 | novel transcript | -1.9690 | 0.0000 | |
| 63334 | ENSG00000258080 | ARHGAP42P4 | Rho GTPase activating protein 42 pseudogene 4 | -1.9690 | 0.0001 |
| 63333 | ENSG00000253810 | PSAT1P1 | phosphoserine aminotransferase 1 pseudogene 1 | -1.9690 | 0.3815 |
| 63332 | ENSG00000233728 | novel transcript | -1.9689 | 0.0000 |
