Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773583
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773583
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M210
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000273804
phospholipase A2, group X (PLA2G10) pseudogene
2.8074
0.0000
2
ENSG00000225384
pseudogene similar to part of poly(A) polymerase alpha (PAPOLA)
2.5850
0.0002
3
ENSG00000233876
GAPDHP68
glyceraldehyde 3 phosphate dehydrogenase pseudogene 68
2.3219
0.0000
4
ENSG00000237569
TUBAP1
tubulin alpha pseudogene 1
2.3219
0.0012
5
ENSG00000240354
novel transcript
2.3219
0.0012
6
ENSG00000270339
PPIAL4H
peptidylprolyl isomerase A like 4H
2.3219
0.0012
7
ENSG00000274615
aminopeptidase puromycin sensitive (NPEPPS) pseudogene
2.3219
0.0000
8
ENSG00000279190
novel transcript
2.3219
0.0012
9
ENSG00000266931
required for meiotic nuclear division 5 homolog A (S. cerevisiae) (RMND5A) pseudogene
2.3137
0.0000
10
ENSG00000221355
MIR1288
microRNA 1288
2.2516
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000104044
OCA2
OCA2 melanosomal transmembrane protein
-1.9219
0.0000
63172
ENSG00000202474
RNA5SP283
RNA, 5S ribosomal pseudogene 283
-1.9218
0.0000
63171
ENSG00000185002
RFX6
regulatory factor X6
-1.9216
0.0000
63170
ENSG00000254122
PCDHGB7
protocadherin gamma subfamily B, 7
-1.9214
0.0000
63169
ENSG00000112309
B3GAT2
beta-1,3-glucuronyltransferase 2
-1.9211
0.0000
63168
ENSG00000259721
novel transcript
-1.9208
0.0000
63167
ENSG00000138622
HCN4
hyperpolarization activated cyclic nucleotide gated potassium channel 4
-1.9205
0.0000
63166
ENSG00000172572
PDE3A
phosphodiesterase 3A
-1.9201
0.0000
63165
ENSG00000264063
NA
-1.9201
0.0000
63164
ENSG00000050030
NEXMIF
neurite extension and migration factor
-1.9199
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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