SHOGoiN Cell Methylome: GSM2773584

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773584


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M211Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200197 RNU1-21P RNA, U1 small nuclear 21, pseudogene 3.5431 0.0000
2 ENSG00000199354 RNA5SP273 RNA, 5S ribosomal pseudogene 273 3.1699 0.0000
3 ENSG00000234173 novel transcript, antisense to PCDH15 3.1699 0.0000
4 ENSG00000235020 novel transcript 2.8962 0.0000
5 ENSG00000212628 RNA5SP241 RNA, 5S ribosomal pseudogene 241 2.8219 0.0000
6 ENSG00000213352 GAPDHP44 glyceraldehyde 3 phosphate dehydrogenase pseudogene 44 2.8178 0.0000
7 ENSG00000183313 OR52L1 olfactory receptor family 52 subfamily L member 1 2.5850 0.0001
8 ENSG00000199856 NA 2.5850 0.0001
9 ENSG00000205495 OR52J3 olfactory receptor family 52 subfamily J member 3 2.5850 0.0000
10 ENSG00000219547 RPL17P25 ribosomal protein L17 pseudogene 25 2.5850 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000184032 KRTAP20-2 keratin associated protein 20-2 -2.3219 1.0000
63340 ENSG00000182447 OTOL1 otolin 1 -2.3219 1.0000
63339 ENSG00000182000 PPIAP73 peptidylprolyl isomerase A pseudogene 73 -2.3219 0.0246
63338 ENSG00000181767 OR8H2 olfactory receptor family 8 subfamily H member 2 -2.3219 0.6197
63337 ENSG00000176246 OR4L1 olfactory receptor family 4 subfamily L member 1 -2.3219 1.0000
63336 ENSG00000169488 OR4K15 olfactory receptor family 4 subfamily K member 15 -2.3219 1.0000
63335 ENSG00000271882 novel transcript -2.3212 0.0000
63334 ENSG00000161798 AQP5 aquaporin 5 -2.3208 0.0000
63333 ENSG00000170385 SLC30A1 solute carrier family 30 member 1 -2.3208 0.0000
63332 ENSG00000279926 TEC -2.3208 0.0259

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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