Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773584

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773584 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M211	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000200197	RNU1-21P	RNA, U1 small nuclear 21, pseudogene	3.5431	0.0000
2	ENSG00000199354	RNA5SP273	RNA, 5S ribosomal pseudogene 273	3.1699	0.0000
3	ENSG00000234173		novel transcript, antisense to PCDH15	3.1699	0.0000
4	ENSG00000235020		novel transcript	2.8962	0.0000
5	ENSG00000212628	RNA5SP241	RNA, 5S ribosomal pseudogene 241	2.8219	0.0000
6	ENSG00000213352	GAPDHP44	glyceraldehyde 3 phosphate dehydrogenase pseudogene 44	2.8178	0.0000
7	ENSG00000183313	OR52L1	olfactory receptor family 52 subfamily L member 1	2.5850	0.0001
8	ENSG00000199856		Small nucleolar RNA U3	2.5850	0.0001
9	ENSG00000205495	OR52J3	olfactory receptor family 52 subfamily J member 3	2.5850	0.0000
10	ENSG00000219547	RPL17P25	ribosomal protein L17 pseudogene 25	2.5850	0.0001

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000227962		ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans) (UBE2G10 pseudogene	-2.2509	0.0000
63127	ENSG00000154760	SLFN13	schlafen family member 13	-2.2508	0.0000
63126	ENSG00000274630		novel transcript, antisense to ACLY	-2.2506	0.0000
63125	ENSG00000102109	PCSK1N	proprotein convertase subtilisin/kexin type 1 inhibitor	-2.2503	0.0000
63124	ENSG00000253818	IGLV1-41	immunoglobulin lambda variable 1-41 (pseudogene)	-2.2500	0.0000
63123	ENSG00000259321		novel transcript	-2.2498	0.0000
63122	ENSG00000163950	SLBP	stem-loop binding protein	-2.2497	0.0000
63121	ENSG00000204851	PNMA8B	PNMA family member 8B	-2.2496	0.0000
63120	ENSG00000178502	KLHL11	kelch like family member 11	-2.2496	0.0000
63119	ENSG00000189419	SPATA41	spermatogenesis associated 41	-2.2484	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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