SHOGoiN Cell Methylome: GSM2773584
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773584 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M211 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000200197 | RNU1-21P | RNA, U1 small nuclear 21, pseudogene | 3.5431 | 0.0000 |
| 2 | ENSG00000199354 | RNA5SP273 | RNA, 5S ribosomal pseudogene 273 | 3.1699 | 0.0000 |
| 3 | ENSG00000234173 | novel transcript, antisense to PCDH15 | 3.1699 | 0.0000 | |
| 4 | ENSG00000235020 | novel transcript | 2.8962 | 0.0000 | |
| 5 | ENSG00000212628 | RNA5SP241 | RNA, 5S ribosomal pseudogene 241 | 2.8219 | 0.0000 |
| 6 | ENSG00000213352 | GAPDHP44 | glyceraldehyde 3 phosphate dehydrogenase pseudogene 44 | 2.8178 | 0.0000 |
| 7 | ENSG00000183313 | OR52L1 | olfactory receptor family 52 subfamily L member 1 | 2.5850 | 0.0001 |
| 8 | ENSG00000199856 | NA | 2.5850 | 0.0001 | |
| 9 | ENSG00000205495 | OR52J3 | olfactory receptor family 52 subfamily J member 3 | 2.5850 | 0.0000 |
| 10 | ENSG00000219547 | RPL17P25 | ribosomal protein L17 pseudogene 25 | 2.5850 | 0.0001 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000184032 | KRTAP20-2 | keratin associated protein 20-2 | -2.3219 | 1.0000 |
| 63340 | ENSG00000182447 | OTOL1 | otolin 1 | -2.3219 | 1.0000 |
| 63339 | ENSG00000182000 | PPIAP73 | peptidylprolyl isomerase A pseudogene 73 | -2.3219 | 0.0246 |
| 63338 | ENSG00000181767 | OR8H2 | olfactory receptor family 8 subfamily H member 2 | -2.3219 | 0.6197 |
| 63337 | ENSG00000176246 | OR4L1 | olfactory receptor family 4 subfamily L member 1 | -2.3219 | 1.0000 |
| 63336 | ENSG00000169488 | OR4K15 | olfactory receptor family 4 subfamily K member 15 | -2.3219 | 1.0000 |
| 63335 | ENSG00000271882 | novel transcript | -2.3212 | 0.0000 | |
| 63334 | ENSG00000161798 | AQP5 | aquaporin 5 | -2.3208 | 0.0000 |
| 63333 | ENSG00000170385 | SLC30A1 | solute carrier family 30 member 1 | -2.3208 | 0.0000 |
| 63332 | ENSG00000279926 | TEC | -2.3208 | 0.0259 |
