Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773584
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773584
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M211
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000200197
RNU1-21P
RNA, U1 small nuclear 21, pseudogene
3.5431
0.0000
2
ENSG00000199354
RNA5SP273
RNA, 5S ribosomal pseudogene 273
3.1699
0.0000
3
ENSG00000234173
novel transcript, antisense to PCDH15
3.1699
0.0000
4
ENSG00000235020
novel transcript
2.8962
0.0000
5
ENSG00000212628
RNA5SP241
RNA, 5S ribosomal pseudogene 241
2.8219
0.0000
6
ENSG00000213352
GAPDHP44
glyceraldehyde 3 phosphate dehydrogenase pseudogene 44
2.8178
0.0000
7
ENSG00000183313
OR52L1
olfactory receptor family 52 subfamily L member 1
2.5850
0.0001
8
ENSG00000199856
Small nucleolar RNA U3
2.5850
0.0001
9
ENSG00000205495
OR52J3
olfactory receptor family 52 subfamily J member 3
2.5850
0.0000
10
ENSG00000219547
RPL17P25
ribosomal protein L17 pseudogene 25
2.5850
0.0001
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000227962
ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans) (UBE2G10 pseudogene
-2.2509
0.0000
63127
ENSG00000154760
SLFN13
schlafen family member 13
-2.2508
0.0000
63126
ENSG00000274630
novel transcript, antisense to ACLY
-2.2506
0.0000
63125
ENSG00000102109
PCSK1N
proprotein convertase subtilisin/kexin type 1 inhibitor
-2.2503
0.0000
63124
ENSG00000253818
IGLV1-41
immunoglobulin lambda variable 1-41 (pseudogene)
-2.2500
0.0000
63123
ENSG00000259321
novel transcript
-2.2498
0.0000
63122
ENSG00000163950
SLBP
stem-loop binding protein
-2.2497
0.0000
63121
ENSG00000204851
PNMA8B
PNMA family member 8B
-2.2496
0.0000
63120
ENSG00000178502
KLHL11
kelch like family member 11
-2.2496
0.0000
63119
ENSG00000189419
SPATA41
spermatogenesis associated 41
-2.2484
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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