Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773584

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773584


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M211Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200197 RNU1-21P RNA, U1 small nuclear 21, pseudogene 3.5431 0.0000
2 ENSG00000199354 RNA5SP273 RNA, 5S ribosomal pseudogene 273 3.1699 0.0000
3 ENSG00000234173 novel transcript, antisense to PCDH15 3.1699 0.0000
4 ENSG00000235020 novel transcript 2.8962 0.0000
5 ENSG00000212628 RNA5SP241 RNA, 5S ribosomal pseudogene 241 2.8219 0.0000
6 ENSG00000213352 GAPDHP44 glyceraldehyde 3 phosphate dehydrogenase pseudogene 44 2.8178 0.0000
7 ENSG00000183313 OR52L1 olfactory receptor family 52 subfamily L member 1 2.5850 0.0001
8 ENSG00000199856 Small nucleolar RNA U3 2.5850 0.0001
9 ENSG00000205495 OR52J3 olfactory receptor family 52 subfamily J member 3 2.5850 0.0000
10 ENSG00000219547 RPL17P25 ribosomal protein L17 pseudogene 25 2.5850 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000227962 ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans) (UBE2G10 pseudogene -2.2509 0.0000
63127 ENSG00000154760 SLFN13 schlafen family member 13 -2.2508 0.0000
63126 ENSG00000274630 novel transcript, antisense to ACLY -2.2506 0.0000
63125 ENSG00000102109 PCSK1N proprotein convertase subtilisin/kexin type 1 inhibitor -2.2503 0.0000
63124 ENSG00000253818 IGLV1-41 immunoglobulin lambda variable 1-41 (pseudogene) -2.2500 0.0000
63123 ENSG00000259321 novel transcript -2.2498 0.0000
63122 ENSG00000163950 SLBP stem-loop binding protein -2.2497 0.0000
63121 ENSG00000204851 PNMA8B PNMA family member 8B -2.2496 0.0000
63120 ENSG00000178502 KLHL11 kelch like family member 11 -2.2496 0.0000
63119 ENSG00000189419 SPATA41 spermatogenesis associated 41 -2.2484 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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