Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773585

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773585


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M212Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000279342 novel transcript, sense intronic to MSANTD2 3.3219 0.0000
2 ENSG00000276810 ribosomal protein L18a (RPL18A) pseudogene 2.8074 0.0000
3 ENSG00000264232 LINC01916 long intergenic non-protein coding RNA 1916 2.5850 0.0001
4 ENSG00000168131 OR2B2 olfactory receptor family 2 subfamily B member 2 2.4842 0.0000
5 ENSG00000233605 LINC01851 long intergenic non-protein coding RNA 1851 2.3219 0.0000
6 ENSG00000239941 novel transcript 2.3219 0.0000
7 ENSG00000249052 novel transcript 2.3219 0.0005
8 ENSG00000258505 leucine-rich pentatricopeptide repeat containing (LRPPRC) pseudogene 2.3219 0.0005
10 ENSG00000197023 OR51A6P olfactory receptor family 51 subfamily A member 6 pseudogene 2.2034 0.0000
63119 ENSG00000272325 NUDT3 nudix hydrolase 3 -2.1448 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000081842 PCDHA6 protocadherin alpha 6 -2.1475 0.0000
63127 ENSG00000241261 RPL17P19 ribosomal protein L17 pseudogene 19 -2.1475 0.0000
63126 ENSG00000258260 novel transcript, antisense to COQ10A -2.1469 0.0000
63125 ENSG00000223046 RNA5SP369 RNA, 5S ribosomal pseudogene 369 -2.1468 0.0000
63124 ENSG00000100399 CHADL chondroadherin like -2.1467 0.0000
63123 ENSG00000134463 ECHDC3 enoyl-CoA hydratase domain containing 3 -2.1464 0.0000
63122 ENSG00000251580 LINC02482 long intergenic non-protein coding RNA 2482 -2.1464 0.0000
63121 ENSG00000057704 TMCC3 transmembrane and coiled-coil domain family 3 -2.1460 0.0000
63120 ENSG00000277888 MIR6846 microRNA 6846 -2.1451 0.0000
63119 ENSG00000272325 NUDT3 nudix hydrolase 3 -2.1448 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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