SHOGoiN Cell Methylome: GSM2773586
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773586 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M213 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000257750 | LINC02445 | long intergenic non-protein coding RNA 2445 | 2.0000 | 0.0000 |
| 2 | ENSG00000237381 | 5'-nucleotidase, cytosolic II-like 1 (NT5C2L1) pseudogene | 1.7925 | 0.0000 | |
| 3 | ENSG00000183432 | ZBTB8OSP1 | zinc finger and BTB domain containing 8 opposite strand pseudogene 1 | 1.4387 | 0.0000 |
| 4 | ENSG00000236534 | H3F3BP1 | H3 histone, family 3B pseudogene 1 | 1.3305 | 0.0000 |
| 5 | ENSG00000270921 | CICP23 | capicua transcriptional repressor pseudogene 23 | 1.3100 | 0.0000 |
| 6 | ENSG00000202283 | NA | 1.2642 | 0.0000 | |
| 7 | ENSG00000249049 | novel transcript, antisense to CCSER1 | 1.2500 | 0.0000 | |
| 8 | ENSG00000207342 | NA | 1.2431 | 0.0000 | |
| 9 | ENSG00000263581 | MIR548X2 | microRNA 548x-2 | 1.1859 | 0.0000 |
| 10 | ENSG00000112874 | NUDT12 | nudix hydrolase 12 | 1.1836 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000275672 | GATM antisense RNA 1 | -1.8892 | 0.0000 | |
| 63340 | ENSG00000156469 | MTERF3 | mitochondrial transcription termination factor 3 | -1.8889 | 0.0000 |
| 63339 | ENSG00000140990 | NDUFB10 | NADH:ubiquinone oxidoreductase subunit B10 | -1.8887 | 0.0000 |
| 63338 | ENSG00000155254 | MARVELD1 | MARVEL domain containing 1 | -1.8887 | 0.0000 |
| 63337 | ENSG00000225706 | PTPRD-AS1 | PTPRD antisense RNA 1 | -1.8886 | 0.0000 |
| 63336 | ENSG00000178163 | ZNF518B | zinc finger protein 518B | -1.8886 | 0.0000 |
| 63335 | ENSG00000280346 | mitochondrial ribosomal protein L51 (MRPL51) pseudogene | -1.8885 | 0.0000 | |
| 63334 | ENSG00000280353 | TEC | -1.8880 | 0.0000 | |
| 63332 | ENSG00000224540 | transcription factor Dp-1 (TFDP1) pseudogene | -1.8877 | 0.0000 | |
| 10 | ENSG00000112874 | NUDT12 | nudix hydrolase 12 | 1.1836 | 0.0000 |
