Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773586

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773586 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M213	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000257750	LINC02445	long intergenic non-protein coding RNA 2445	2.0000	0.0000
2	ENSG00000237381	NT5DC1P1	NT5DC1 pseudogene 1	1.7925	0.0000
3	ENSG00000183432	ZBTB8OSP1	zinc finger and BTB domain containing 8 opposite strand pseudogene 1	1.4387	0.0000
4	ENSG00000236534	H3P36	H3 histone pseudogene 36	1.3305	0.0000
5	ENSG00000270921	CICP23	capicua transcriptional repressor pseudogene 23	1.3100	0.0000
6	ENSG00000202283		NA	1.2642	0.0000
7	ENSG00000249049		novel transcript, antisense to CCSER1	1.2500	0.0000
8	ENSG00000207342		Y RNA	1.2431	0.0000
9	ENSG00000263581	MIR548X2	microRNA 548x-2	1.1859	0.0000
10	ENSG00000112874	NUDT12	nudix hydrolase 12	1.1836	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000205485		pseudogene similar to part of postmeiotic segregation increased 2-like 3 PMS2L3	-1.8390	0.0000
63127	ENSG00000265744	MIR4427	microRNA 4427	-1.8388	0.0000
63126	ENSG00000269883		novel transcript, antisense to ZDHHC22	-1.8388	0.0000
63125	ENSG00000279983		novel protein	-1.8388	0.0000
63124	ENSG00000120327	PCDHB14	protocadherin beta 14	-1.8388	0.0000
63123	ENSG00000136931	NR5A1	nuclear receptor subfamily 5 group A member 1	-1.8388	0.0000
63122	ENSG00000196862	RGPD4	RANBP2 like and GRIP domain containing 4	-1.8385	0.0000
63121	ENSG00000224842		novel transcript, antisense to LIM1B	-1.8384	0.0000
63120	ENSG00000115289	PCGF1	polycomb group ring finger 1	-1.8382	0.0000
63119	ENSG00000106004	HOXA5	homeobox A5	-1.8381	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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