Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773586

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773586


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M213Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257750 LINC02445 long intergenic non-protein coding RNA 2445 2.0000 0.0000
2 ENSG00000237381 NT5DC1P1 NT5DC1 pseudogene 1 1.7925 0.0000
3 ENSG00000183432 ZBTB8OSP1 zinc finger and BTB domain containing 8 opposite strand pseudogene 1 1.4387 0.0000
4 ENSG00000236534 H3P36 H3 histone pseudogene 36 1.3305 0.0000
5 ENSG00000270921 CICP23 capicua transcriptional repressor pseudogene 23 1.3100 0.0000
6 ENSG00000202283 NA 1.2642 0.0000
7 ENSG00000249049 novel transcript, antisense to CCSER1 1.2500 0.0000
8 ENSG00000207342 Y RNA 1.2431 0.0000
9 ENSG00000263581 MIR548X2 microRNA 548x-2 1.1859 0.0000
10 ENSG00000112874 NUDT12 nudix hydrolase 12 1.1836 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000205485 pseudogene similar to part of postmeiotic segregation increased 2-like 3 PMS2L3 -1.8390 0.0000
63127 ENSG00000265744 MIR4427 microRNA 4427 -1.8388 0.0000
63126 ENSG00000269883 novel transcript, antisense to ZDHHC22 -1.8388 0.0000
63125 ENSG00000279983 novel protein -1.8388 0.0000
63124 ENSG00000120327 PCDHB14 protocadherin beta 14 -1.8388 0.0000
63123 ENSG00000136931 NR5A1 nuclear receptor subfamily 5 group A member 1 -1.8388 0.0000
63122 ENSG00000196862 RGPD4 RANBP2 like and GRIP domain containing 4 -1.8385 0.0000
63121 ENSG00000224842 novel transcript, antisense to LIM1B -1.8384 0.0000
63120 ENSG00000115289 PCGF1 polycomb group ring finger 1 -1.8382 0.0000
63119 ENSG00000106004 HOXA5 homeobox A5 -1.8381 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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