SHOGoiN Cell Methylome: GSM2773586

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773586


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M213Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257750 LINC02445 long intergenic non-protein coding RNA 2445 2.0000 0.0000
2 ENSG00000237381 5'-nucleotidase, cytosolic II-like 1 (NT5C2L1) pseudogene 1.7925 0.0000
3 ENSG00000183432 ZBTB8OSP1 zinc finger and BTB domain containing 8 opposite strand pseudogene 1 1.4387 0.0000
4 ENSG00000236534 H3F3BP1 H3 histone, family 3B pseudogene 1 1.3305 0.0000
5 ENSG00000270921 CICP23 capicua transcriptional repressor pseudogene 23 1.3100 0.0000
6 ENSG00000202283 NA 1.2642 0.0000
7 ENSG00000249049 novel transcript, antisense to CCSER1 1.2500 0.0000
8 ENSG00000207342 NA 1.2431 0.0000
9 ENSG00000263581 MIR548X2 microRNA 548x-2 1.1859 0.0000
10 ENSG00000112874 NUDT12 nudix hydrolase 12 1.1836 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000275672 GATM antisense RNA 1 -1.8892 0.0000
63340 ENSG00000156469 MTERF3 mitochondrial transcription termination factor 3 -1.8889 0.0000
63339 ENSG00000140990 NDUFB10 NADH:ubiquinone oxidoreductase subunit B10 -1.8887 0.0000
63338 ENSG00000155254 MARVELD1 MARVEL domain containing 1 -1.8887 0.0000
63337 ENSG00000225706 PTPRD-AS1 PTPRD antisense RNA 1 -1.8886 0.0000
63336 ENSG00000178163 ZNF518B zinc finger protein 518B -1.8886 0.0000
63335 ENSG00000280346 mitochondrial ribosomal protein L51 (MRPL51) pseudogene -1.8885 0.0000
63334 ENSG00000280353 TEC -1.8880 0.0000
63332 ENSG00000224540 transcription factor Dp-1 (TFDP1) pseudogene -1.8877 0.0000
10 ENSG00000112874 NUDT12 nudix hydrolase 12 1.1836 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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