Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773586
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773586
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M213
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000257750
LINC02445
long intergenic non-protein coding RNA 2445
2.0000
0.0000
2
ENSG00000237381
NT5DC1P1
NT5DC1 pseudogene 1
1.7925
0.0000
3
ENSG00000183432
ZBTB8OSP1
zinc finger and BTB domain containing 8 opposite strand pseudogene 1
1.4387
0.0000
4
ENSG00000236534
H3P36
H3 histone pseudogene 36
1.3305
0.0000
5
ENSG00000270921
CICP23
capicua transcriptional repressor pseudogene 23
1.3100
0.0000
6
ENSG00000202283
NA
1.2642
0.0000
7
ENSG00000249049
novel transcript, antisense to CCSER1
1.2500
0.0000
8
ENSG00000207342
Y RNA
1.2431
0.0000
9
ENSG00000263581
MIR548X2
microRNA 548x-2
1.1859
0.0000
10
ENSG00000112874
NUDT12
nudix hydrolase 12
1.1836
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000205485
pseudogene similar to part of postmeiotic segregation increased 2-like 3 PMS2L3
-1.8390
0.0000
63127
ENSG00000265744
MIR4427
microRNA 4427
-1.8388
0.0000
63126
ENSG00000269883
novel transcript, antisense to ZDHHC22
-1.8388
0.0000
63125
ENSG00000279983
novel protein
-1.8388
0.0000
63124
ENSG00000120327
PCDHB14
protocadherin beta 14
-1.8388
0.0000
63123
ENSG00000136931
NR5A1
nuclear receptor subfamily 5 group A member 1
-1.8388
0.0000
63122
ENSG00000196862
RGPD4
RANBP2 like and GRIP domain containing 4
-1.8385
0.0000
63121
ENSG00000224842
novel transcript, antisense to LIM1B
-1.8384
0.0000
63120
ENSG00000115289
PCGF1
polycomb group ring finger 1
-1.8382
0.0000
63119
ENSG00000106004
HOXA5
homeobox A5
-1.8381
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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