SHOGoiN Cell Methylome: GSM2773587

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773587


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M214Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000217160 MTCO2P31 MT-CO2 pseudogene 31 2.5850 0.0000
2 ENSG00000218776 MTATP6P31 MT-ATP6 pseudogene 31 2.5850 0.0000
3 ENSG00000242246 mitochondrially encoded ATP synthase 8 (MT-ATP8) pseudogene 2.5850 0.0000
4 ENSG00000255486 tripartite motif-containing protein (TRIM) pseudogene 2.5850 0.0000
5 ENSG00000201644 NA 2.3350 0.0000
6 ENSG00000171014 OR4D5 olfactory receptor family 4 subfamily D member 5 2.3219 0.0000
7 ENSG00000206034 DEFB109B defensin beta 109B 2.3219 0.0000
8 ENSG00000210825 SNORA40 small nucleolar RNA, H/ACA box 40 2.3219 0.0005
9 ENSG00000248627 novel transcript 2.3219 0.0005
10 ENSG00000249579 secretory carrier membrane protein 1 (SCAMP1) pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000259444 novel transcript, sense overlapping EXOC3L4 -2.0043 0.0000
63340 ENSG00000229124 VIM-AS1 VIM antisense RNA 1 -2.0039 0.0000
63339 ENSG00000260370 novel transcript -2.0039 0.0000
63338 ENSG00000213996 TM6SF2 transmembrane 6 superfamily member 2 -2.0038 0.0000
63337 ENSG00000249865 novel transcript -2.0034 0.0001
63336 ENSG00000180697 C3orf22 chromosome 3 open reading frame 22 -2.0033 0.0000
63335 ENSG00000251929 RNU6-189P RNA, U6 small nuclear 189, pseudogene -2.0027 0.0000
63334 ENSG00000159348 CYB5R1 cytochrome b5 reductase 1 -2.0022 0.0000
63333 ENSG00000152192 POU4F1 POU class 4 homeobox 1 -2.0021 0.0000
63332 ENSG00000223131 RNA5SP304 RNA, 5S ribosomal pseudogene 304 -2.0016 0.0020

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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