Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773587
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773587
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M214
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000217160
MTCO2P31
MT-CO2 pseudogene 31
2.5850
0.0000
2
ENSG00000218776
MTATP6P31
MT-ATP6 pseudogene 31
2.5850
0.0000
3
ENSG00000242246
mitochondrially encoded ATP synthase 8 (MT-ATP8) pseudogene
2.5850
0.0000
4
ENSG00000255486
tripartite motif-containing protein (TRIM) pseudogene
2.5850
0.0000
5
ENSG00000201644
Y RNA
2.3350
0.0000
6
ENSG00000171014
OR4D5
olfactory receptor family 4 subfamily D member 5
2.3219
0.0000
7
ENSG00000206034
DEFB109B
defensin beta 109B
2.3219
0.0000
8
ENSG00000210825
SNORA40
small nucleolar RNA, H/ACA box 40
2.3219
0.0005
9
ENSG00000248627
novel transcript
2.3219
0.0005
10
ENSG00000249579
secretory carrier membrane protein 1 (SCAMP1) pseudogene
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000228300
FAM174C
family with sequence similarity 174 member C
-1.9586
0.0000
63127
ENSG00000259802
novel transcript, antisense to MARCH6
-1.9586
0.0000
63126
ENSG00000260285
novel transcript, antisense to TRMT61A
-1.9584
0.0000
63125
ENSG00000120055
C10orf95
chromosome 10 open reading frame 95
-1.9582
0.0000
63124
ENSG00000225024
RPL37P11
ribosomal protein L37 pseudogene 11
-1.9582
0.0000
63123
ENSG00000185386
MAPK11
mitogen-activated protein kinase 11
-1.9581
0.0000
63122
ENSG00000275004
ZNF280B
zinc finger protein 280B
-1.9580
0.0000
63121
ENSG00000251572
zinc finger protein 705A (ZNF705A) pseudogene
-1.9579
0.0029
63120
ENSG00000257872
reticulon 4 interacting protein 1 (RTN4IP1) pseudogene
-1.9577
0.1141
63119
ENSG00000184303
DRD5P1
dopamine receptor D5 pseudogene 1
-1.9577
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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