SHOGoiN Cell Methylome: GSM2773587
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773587 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M214 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000217160 | MTCO2P31 | MT-CO2 pseudogene 31 | 2.5850 | 0.0000 |
| 2 | ENSG00000218776 | MTATP6P31 | MT-ATP6 pseudogene 31 | 2.5850 | 0.0000 |
| 3 | ENSG00000242246 | mitochondrially encoded ATP synthase 8 (MT-ATP8) pseudogene | 2.5850 | 0.0000 | |
| 4 | ENSG00000255486 | tripartite motif-containing protein (TRIM) pseudogene | 2.5850 | 0.0000 | |
| 5 | ENSG00000201644 | NA | 2.3350 | 0.0000 | |
| 6 | ENSG00000171014 | OR4D5 | olfactory receptor family 4 subfamily D member 5 | 2.3219 | 0.0000 |
| 7 | ENSG00000206034 | DEFB109B | defensin beta 109B | 2.3219 | 0.0000 |
| 8 | ENSG00000210825 | SNORA40 | small nucleolar RNA, H/ACA box 40 | 2.3219 | 0.0005 |
| 9 | ENSG00000248627 | novel transcript | 2.3219 | 0.0005 | |
| 10 | ENSG00000249579 | secretory carrier membrane protein 1 (SCAMP1) pseudogene | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000259444 | novel transcript, sense overlapping EXOC3L4 | -2.0043 | 0.0000 | |
| 63340 | ENSG00000229124 | VIM-AS1 | VIM antisense RNA 1 | -2.0039 | 0.0000 |
| 63339 | ENSG00000260370 | novel transcript | -2.0039 | 0.0000 | |
| 63338 | ENSG00000213996 | TM6SF2 | transmembrane 6 superfamily member 2 | -2.0038 | 0.0000 |
| 63337 | ENSG00000249865 | novel transcript | -2.0034 | 0.0001 | |
| 63336 | ENSG00000180697 | C3orf22 | chromosome 3 open reading frame 22 | -2.0033 | 0.0000 |
| 63335 | ENSG00000251929 | RNU6-189P | RNA, U6 small nuclear 189, pseudogene | -2.0027 | 0.0000 |
| 63334 | ENSG00000159348 | CYB5R1 | cytochrome b5 reductase 1 | -2.0022 | 0.0000 |
| 63333 | ENSG00000152192 | POU4F1 | POU class 4 homeobox 1 | -2.0021 | 0.0000 |
| 63332 | ENSG00000223131 | RNA5SP304 | RNA, 5S ribosomal pseudogene 304 | -2.0016 | 0.0020 |
