Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773587

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773587


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M214Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000217160 MTCO2P31 MT-CO2 pseudogene 31 2.5850 0.0000
2 ENSG00000218776 MTATP6P31 MT-ATP6 pseudogene 31 2.5850 0.0000
3 ENSG00000242246 mitochondrially encoded ATP synthase 8 (MT-ATP8) pseudogene 2.5850 0.0000
4 ENSG00000255486 tripartite motif-containing protein (TRIM) pseudogene 2.5850 0.0000
5 ENSG00000201644 Y RNA 2.3350 0.0000
6 ENSG00000171014 OR4D5 olfactory receptor family 4 subfamily D member 5 2.3219 0.0000
7 ENSG00000206034 DEFB109B defensin beta 109B 2.3219 0.0000
8 ENSG00000210825 SNORA40 small nucleolar RNA, H/ACA box 40 2.3219 0.0005
9 ENSG00000248627 novel transcript 2.3219 0.0005
10 ENSG00000249579 secretory carrier membrane protein 1 (SCAMP1) pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000228300 FAM174C family with sequence similarity 174 member C -1.9586 0.0000
63127 ENSG00000259802 novel transcript, antisense to MARCH6 -1.9586 0.0000
63126 ENSG00000260285 novel transcript, antisense to TRMT61A -1.9584 0.0000
63125 ENSG00000120055 C10orf95 chromosome 10 open reading frame 95 -1.9582 0.0000
63124 ENSG00000225024 RPL37P11 ribosomal protein L37 pseudogene 11 -1.9582 0.0000
63123 ENSG00000185386 MAPK11 mitogen-activated protein kinase 11 -1.9581 0.0000
63122 ENSG00000275004 ZNF280B zinc finger protein 280B -1.9580 0.0000
63121 ENSG00000251572 zinc finger protein 705A (ZNF705A) pseudogene -1.9579 0.0029
63120 ENSG00000257872 reticulon 4 interacting protein 1 (RTN4IP1) pseudogene -1.9577 0.1141
63119 ENSG00000184303 DRD5P1 dopamine receptor D5 pseudogene 1 -1.9577 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...