Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773587

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773587 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M214	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000217160	MTCO2P31	MT-CO2 pseudogene 31	2.5850	0.0000
2	ENSG00000218776	MTATP6P31	MT-ATP6 pseudogene 31	2.5850	0.0000
3	ENSG00000242246		mitochondrially encoded ATP synthase 8 (MT-ATP8) pseudogene	2.5850	0.0000
4	ENSG00000255486		tripartite motif-containing protein (TRIM) pseudogene	2.5850	0.0000
5	ENSG00000201644		Y RNA	2.3350	0.0000
6	ENSG00000171014	OR4D5	olfactory receptor family 4 subfamily D member 5	2.3219	0.0000
7	ENSG00000206034	DEFB109B	defensin beta 109B	2.3219	0.0000
8	ENSG00000210825	SNORA40	small nucleolar RNA, H/ACA box 40	2.3219	0.0005
9	ENSG00000248627		novel transcript	2.3219	0.0005
10	ENSG00000249579		secretory carrier membrane protein 1 (SCAMP1) pseudogene	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000228300	FAM174C	family with sequence similarity 174 member C	-1.9586	0.0000
63127	ENSG00000259802		novel transcript, antisense to MARCH6	-1.9586	0.0000
63126	ENSG00000260285		novel transcript, antisense to TRMT61A	-1.9584	0.0000
63125	ENSG00000120055	C10orf95	chromosome 10 open reading frame 95	-1.9582	0.0000
63124	ENSG00000225024	RPL37P11	ribosomal protein L37 pseudogene 11	-1.9582	0.0000
63123	ENSG00000185386	MAPK11	mitogen-activated protein kinase 11	-1.9581	0.0000
63122	ENSG00000275004	ZNF280B	zinc finger protein 280B	-1.9580	0.0000
63121	ENSG00000251572		zinc finger protein 705A (ZNF705A) pseudogene	-1.9579	0.0029
63120	ENSG00000257872		reticulon 4 interacting protein 1 (RTN4IP1) pseudogene	-1.9577	0.1141
63119	ENSG00000184303	DRD5P1	dopamine receptor D5 pseudogene 1	-1.9577	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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