Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773588
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773588
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M215
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000234860
novel transcript
2.8074
0.0000
2
ENSG00000206629
RNU1-63P
RNA, U1 small nuclear 63, pseudogene
2.3219
0.0002
3
ENSG00000212428
Small nucleolar RNA SNORD115
2.3219
0.0002
4
ENSG00000222578
RNA5SP345
RNA, 5S ribosomal pseudogene 345
2.3219
0.0000
5
ENSG00000225924
TAB2-AS1
TAB2 antisense RNA 1
2.3219
0.0002
6
ENSG00000228814
heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1) pseudogene
2.3219
0.0002
7
ENSG00000251126
novel transcript, antisense to ANK2
2.3219
0.0002
8
ENSG00000255076
novel transcript
2.3219
0.0002
9
ENSG00000261654
novel transcript, sense overlapping C1orf103
2.3219
0.0002
10
ENSG00000262732
novel transcript, antisense to ERCC4
2.3219
0.0002
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000164300
SERINC5
serine incorporator 5
-1.9218
0.0000
63127
ENSG00000278020
NA
-1.9215
0.0000
63126
ENSG00000234695
TFPI2-DT
TFPI2 divergent transcript
-1.9214
0.0002
63125
ENSG00000105825
TFPI2
tissue factor pathway inhibitor 2
-1.9214
0.0002
63124
ENSG00000249564
novel pseudogene
-1.9212
0.0834
63123
ENSG00000229320
KRT8P12
keratin 8 pseudogene 12
-1.9212
0.0000
63122
ENSG00000119280
C1orf198
chromosome 1 open reading frame 198
-1.9208
0.0000
63121
ENSG00000278708
NA
-1.9202
0.0000
63120
ENSG00000223963
THAP12P8
THAP domain containing 12 pseudogene 8
-1.9193
0.0000
63119
ENSG00000260626
novel transcript
-1.9191
0.0004
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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