Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773588

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773588 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M215	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000234860		novel transcript	2.8074	0.0000
2	ENSG00000206629	RNU1-63P	RNA, U1 small nuclear 63, pseudogene	2.3219	0.0002
3	ENSG00000212428		Small nucleolar RNA SNORD115	2.3219	0.0002
4	ENSG00000222578	RNA5SP345	RNA, 5S ribosomal pseudogene 345	2.3219	0.0000
5	ENSG00000225924	TAB2-AS1	TAB2 antisense RNA 1	2.3219	0.0002
6	ENSG00000228814		heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1) pseudogene	2.3219	0.0002
7	ENSG00000251126		novel transcript, antisense to ANK2	2.3219	0.0002
8	ENSG00000255076		novel transcript	2.3219	0.0002
9	ENSG00000261654		novel transcript, sense overlapping C1orf103	2.3219	0.0002
10	ENSG00000262732		novel transcript, antisense to ERCC4	2.3219	0.0002

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000164300	SERINC5	serine incorporator 5	-1.9218	0.0000
63127	ENSG00000278020		NA	-1.9215	0.0000
63126	ENSG00000234695	TFPI2-DT	TFPI2 divergent transcript	-1.9214	0.0002
63125	ENSG00000105825	TFPI2	tissue factor pathway inhibitor 2	-1.9214	0.0002
63124	ENSG00000249564		novel pseudogene	-1.9212	0.0834
63123	ENSG00000229320	KRT8P12	keratin 8 pseudogene 12	-1.9212	0.0000
63122	ENSG00000119280	C1orf198	chromosome 1 open reading frame 198	-1.9208	0.0000
63121	ENSG00000278708		NA	-1.9202	0.0000
63120	ENSG00000223963	THAP12P8	THAP domain containing 12 pseudogene 8	-1.9193	0.0000
63119	ENSG00000260626		novel transcript	-1.9191	0.0004

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...