SHOGoiN Cell Methylome: GSM2773588
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773588 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M215 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000234860 | novel transcript | 2.8074 | 0.0000 | |
| 2 | ENSG00000206629 | RNU1-63P | RNA, U1 small nuclear 63, pseudogene | 2.3219 | 0.0002 |
| 3 | ENSG00000212428 | NA | 2.3219 | 0.0002 | |
| 4 | ENSG00000222578 | RNA5SP345 | RNA, 5S ribosomal pseudogene 345 | 2.3219 | 0.0000 |
| 5 | ENSG00000225924 | TAB2-AS1 | TAB2 antisense RNA 1 | 2.3219 | 0.0002 |
| 6 | ENSG00000228814 | heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1) pseudogene | 2.3219 | 0.0002 | |
| 7 | ENSG00000251126 | novel transcript, antisense to ANK2 | 2.3219 | 0.0002 | |
| 8 | ENSG00000255076 | novel transcript | 2.3219 | 0.0002 | |
| 9 | ENSG00000261654 | novel transcript, sense overlapping C1orf103 | 2.3219 | 0.0002 | |
| 10 | ENSG00000262732 | novel transcript, antisense to ERCC4 | 2.3219 | 0.0002 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000164611 | PTTG1 | PTTG1 regulator of sister chromatid separation, securin | -1.9997 | 0.0000 |
| 63340 | ENSG00000114656 | KIAA1257 | KIAA1257 | -1.9991 | 0.0000 |
| 63339 | ENSG00000200926 | RNU6-960P | RNA, U6 small nuclear 960, pseudogene | -1.9991 | 0.0000 |
| 63338 | ENSG00000266458 | MIR4259 | microRNA 4259 | -1.9982 | 0.0083 |
| 63337 | ENSG00000235992 | GRAMD4P2 | GRAM domain containing 4 pseudogene 2 | -1.9980 | 0.0000 |
| 63336 | ENSG00000102221 | JADE3 | jade family PHD finger 3 | -1.9978 | 0.0000 |
| 63335 | ENSG00000232548 | LINC01809 | long intergenic non-protein coding RNA 1809 | -1.9973 | 0.0000 |
| 63334 | ENSG00000122254 | HS3ST2 | heparan sulfate-glucosamine 3-sulfotransferase 2 | -1.9964 | 0.0000 |
| 63333 | ENSG00000251834 | RNU6-319P | RNA, U6 small nuclear 319, pseudogene | -1.9940 | 0.0000 |
| 63332 | ENSG00000267223 | novel transcript, antisense to ZNF536 | -1.9939 | 0.0000 |
