SHOGoiN Cell Methylome: GSM2773588

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773588


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M215Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000234860 novel transcript 2.8074 0.0000
2 ENSG00000206629 RNU1-63P RNA, U1 small nuclear 63, pseudogene 2.3219 0.0002
3 ENSG00000212428 NA 2.3219 0.0002
4 ENSG00000222578 RNA5SP345 RNA, 5S ribosomal pseudogene 345 2.3219 0.0000
5 ENSG00000225924 TAB2-AS1 TAB2 antisense RNA 1 2.3219 0.0002
6 ENSG00000228814 heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1) pseudogene 2.3219 0.0002
7 ENSG00000251126 novel transcript, antisense to ANK2 2.3219 0.0002
8 ENSG00000255076 novel transcript 2.3219 0.0002
9 ENSG00000261654 novel transcript, sense overlapping C1orf103 2.3219 0.0002
10 ENSG00000262732 novel transcript, antisense to ERCC4 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000164611 PTTG1 PTTG1 regulator of sister chromatid separation, securin -1.9997 0.0000
63340 ENSG00000114656 KIAA1257 KIAA1257 -1.9991 0.0000
63339 ENSG00000200926 RNU6-960P RNA, U6 small nuclear 960, pseudogene -1.9991 0.0000
63338 ENSG00000266458 MIR4259 microRNA 4259 -1.9982 0.0083
63337 ENSG00000235992 GRAMD4P2 GRAM domain containing 4 pseudogene 2 -1.9980 0.0000
63336 ENSG00000102221 JADE3 jade family PHD finger 3 -1.9978 0.0000
63335 ENSG00000232548 LINC01809 long intergenic non-protein coding RNA 1809 -1.9973 0.0000
63334 ENSG00000122254 HS3ST2 heparan sulfate-glucosamine 3-sulfotransferase 2 -1.9964 0.0000
63333 ENSG00000251834 RNU6-319P RNA, U6 small nuclear 319, pseudogene -1.9940 0.0000
63332 ENSG00000267223 novel transcript, antisense to ZNF536 -1.9939 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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