Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773588

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773588


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M215Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000234860 novel transcript 2.8074 0.0000
2 ENSG00000206629 RNU1-63P RNA, U1 small nuclear 63, pseudogene 2.3219 0.0002
3 ENSG00000212428 Small nucleolar RNA SNORD115 2.3219 0.0002
4 ENSG00000222578 RNA5SP345 RNA, 5S ribosomal pseudogene 345 2.3219 0.0000
5 ENSG00000225924 TAB2-AS1 TAB2 antisense RNA 1 2.3219 0.0002
6 ENSG00000228814 heterogeneous nuclear ribonucleoprotein A1 (HNRNPA1) pseudogene 2.3219 0.0002
7 ENSG00000251126 novel transcript, antisense to ANK2 2.3219 0.0002
8 ENSG00000255076 novel transcript 2.3219 0.0002
9 ENSG00000261654 novel transcript, sense overlapping C1orf103 2.3219 0.0002
10 ENSG00000262732 novel transcript, antisense to ERCC4 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000164300 SERINC5 serine incorporator 5 -1.9218 0.0000
63127 ENSG00000278020 NA -1.9215 0.0000
63126 ENSG00000234695 TFPI2-DT TFPI2 divergent transcript -1.9214 0.0002
63125 ENSG00000105825 TFPI2 tissue factor pathway inhibitor 2 -1.9214 0.0002
63124 ENSG00000249564 novel pseudogene -1.9212 0.0834
63123 ENSG00000229320 KRT8P12 keratin 8 pseudogene 12 -1.9212 0.0000
63122 ENSG00000119280 C1orf198 chromosome 1 open reading frame 198 -1.9208 0.0000
63121 ENSG00000278708 NA -1.9202 0.0000
63120 ENSG00000223963 THAP12P8 THAP domain containing 12 pseudogene 8 -1.9193 0.0000
63119 ENSG00000260626 novel transcript -1.9191 0.0004

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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