Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773589

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773589


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M216Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000279671 TEC 3.1699 0.0000
2 ENSG00000270074 novel transcript 2.8074 0.0000
3 ENSG00000249958 CCT7P2 chaperonin containing TCP1 subunit 7 pseudogene 2 2.5850 0.0000
4 ENSG00000263382 novel transcript 2.5850 0.0000
5 ENSG00000273085 OR52E1 olfactory receptor family 52 subfamily E member 1 (gene/pseudogene) 2.5850 0.0000
6 ENSG00000241406 RN7SL515P RNA, 7SL, cytoplasmic 515, pseudogene 2.5480 0.0000
7 ENSG00000237349 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa (NDUFB3) pseudogene 2.5000 0.0000
8 ENSG00000226626 NOP56P2 NOP56 ribonucleoprotein pseudogene 2 2.3219 0.0002
9 ENSG00000234829 IFNA17 interferon alpha 17 2.3219 0.0002
10 ENSG00000238561 RNU6ATAC28P RNA, U6atac small nuclear 28, pseudogene 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000161958 FGF11 fibroblast growth factor 11 -2.1310 0.0000
63127 ENSG00000089558 KCNH4 potassium voltage-gated channel subfamily H member 4 -2.1308 0.0000
63126 ENSG00000017797 RALBP1 ralA binding protein 1 -2.1306 0.0000
63125 ENSG00000163273 NPPC natriuretic peptide C -2.1306 0.0000
63124 ENSG00000204899 MZT1 mitotic spindle organizing protein 1 -2.1304 0.0002
63123 ENSG00000185614 INKA1 inka box actin regulator 1 -2.1303 0.0000
63122 ENSG00000115896 PLCL1 phospholipase C like 1 (inactive) -2.1300 0.0000
63121 ENSG00000237819 CDK6-AS1 CDK6 antisense RNA 1 -2.1300 0.0000
63120 ENSG00000253340 programmed cell death 10 (PDCD10) pseudogene -2.1300 0.0002
63119 ENSG00000170385 SLC30A1 solute carrier family 30 member 1 -2.1298 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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