SHOGoiN Cell Methylome: GSM2773589

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773589


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M216Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000279671 TEC 3.1699 0.0000
2 ENSG00000270074 novel transcript 2.8074 0.0000
3 ENSG00000249958 CCT7P2 chaperonin containing TCP1 subunit 7 pseudogene 2 2.5850 0.0000
4 ENSG00000263382 novel transcript 2.5850 0.0000
5 ENSG00000273085 OR52E1 olfactory receptor family 52 subfamily E member 1 (gene/pseudogene) 2.5850 0.0000
6 ENSG00000241406 RN7SL515P RNA, 7SL, cytoplasmic 515, pseudogene 2.5480 0.0000
7 ENSG00000237349 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa (NDUFB3) pseudogene 2.5000 0.0000
8 ENSG00000226626 NOP56P2 NOP56 ribonucleoprotein pseudogene 2 2.3219 0.0002
9 ENSG00000234829 IFNA17 interferon alpha 17 2.3219 0.0002
10 ENSG00000238561 RNU6ATAC28P RNA, U6atac small nuclear 28, pseudogene 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000271616 COX assembly mitochondrial protein 2 homolog (S. cerevisiae) (CMC2) pseudogene -2.1931 0.0023
63340 ENSG00000233926 novel transcript -2.1919 0.0000
63339 ENSG00000214305 NA -2.1917 0.0000
63338 ENSG00000271659 novel transcript, antisense to PTCH1 -2.1917 0.0000
63337 ENSG00000279472 novel transcript -2.1916 0.0000
63336 ENSG00000120322 PCDHB8 protocadherin beta 8 -2.1916 0.0000
63335 ENSG00000196570 PFN3 profilin 3 -2.1912 0.0000
63334 ENSG00000136950 ARPC5L actin related protein 2/3 complex subunit 5 like -2.1907 0.0000
63333 ENSG00000256189 developmental pluripotency associated 4 (DPPA4) pseudogene -2.1905 0.0000
63332 ENSG00000272455 novel transcript -2.1899 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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