SHOGoiN Cell Methylome: GSM2773590

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773590


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M217Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000275508 zinc finger, MYM-type 1 (ZMYM1) pseudogene 3.7004 0.0000
2 ENSG00000280136 novel transcript 3.2340 0.0000
3 ENSG00000258039 novel transcript, antisense & intronic to ANKS1B 2.8074 0.0000
4 ENSG00000278433 MIR6070 microRNA 6070 2.7363 0.0000
5 ENSG00000250666 LINC01596 long intergenic non-protein coding RNA 1596 2.6819 0.0000
6 ENSG00000232668 keratin associated protein 5-11 (KRTAP5-11) pseudogene 2.6643 0.0000
7 ENSG00000226262 PHKBP1 phosphorylase kinase regulatory subunit beta pseudogene 1 2.5850 0.0000
8 ENSG00000229182 MRPS16P1 mitochondrial ribosomal protein S16 pseudogene 1 2.5850 0.0000
9 ENSG00000251492 eukaryotic translation termination factor 1 (ETF1) pseudogene 2.5850 0.0035
10 ENSG00000265433 MIR4447 microRNA 4447 2.5850 0.0035

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000152804 HHEX hematopoietically expressed homeobox -1.6248 0.0000
63340 ENSG00000272114 novel transcript, antisense to VEGFA -1.6247 0.0000
63339 ENSG00000238962 RNU7-176P RNA, U7 small nuclear 176 pseudogene -1.6238 0.0000
63338 ENSG00000178860 MSC musculin -1.6237 0.0000
63337 ENSG00000134461 ANKRD16 ankyrin repeat domain 16 -1.6236 0.0000
63336 ENSG00000260596 DUX4 double homeobox 4 -1.6234 0.0000
63335 ENSG00000117036 ETV3 ETS variant 3 -1.6233 0.0000
63334 ENSG00000259698 FAM30C family with sequence similarity 30 member C -1.6229 0.0001
63333 ENSG00000186207 LCE5A late cornified envelope 5A -1.6229 0.0001
63332 ENSG00000140691 ARMC5 armadillo repeat containing 5 -1.6226 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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