Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773591

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773591


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M218Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000237663 DNAJC19P7 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 7 3.3219 0.0000
2 ENSG00000221545 MIR1255B2 microRNA 1255b-2 3.0000 0.0000
3 ENSG00000235133 RPL35AP22 ribosomal protein L35a pseudogene 22 3.0000 0.0000
4 ENSG00000090104 RGS1 regulator of G protein signaling 1 2.8074 0.0000
5 ENSG00000214073 RPL21P17 ribosomal protein L21 pseudogene 17 2.8074 0.0000
6 ENSG00000233994 GDI2P2 GDP dissociation inhibitor 2 pseudogene 2 2.8074 0.0000
7 ENSG00000256285 OSBPL9P5 oxysterol binding protein like 9 pseudogene 5 2.8074 0.0000
8 ENSG00000265885 RN7SL783P RNA, 7SL, cytoplasmic 783, pseudogene 2.7740 0.0000
9 ENSG00000278206 novel transcript 2.6962 0.0000
10 ENSG00000271793 novel protein, SYNCRIP-SNX14 readthrough 2.6923 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000169884 WNT10B Wnt family member 10B -2.4455 0.0000
63127 ENSG00000274977 galactose-3-O-sulfotransferase 4 (GAL3ST4) pseudogene -2.4451 0.0000
63126 ENSG00000109445 ZNF330 zinc finger protein 330 -2.4449 0.0000
63125 ENSG00000241458 RPL7P19 ribosomal protein L7 pseudogene 19 -2.4444 0.0000
63124 ENSG00000130701 RBBP8NL RBBP8 N-terminal like -2.4442 0.0000
63123 ENSG00000088766 CRLS1 cardiolipin synthase 1 -2.4439 0.0000
63122 ENSG00000225002 novel transcript -2.4438 0.0000
63121 ENSG00000019505 SYT13 synaptotagmin 13 -2.4435 0.0000
63120 ENSG00000207329 Y RNA -2.4428 0.0000
63119 ENSG00000228544 CCDC183-AS1 CCDC183 antisense RNA 1 -2.4426 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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