Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773592

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773592


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M219Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 4.0683 0.0000
2 ENSG00000218175 ribosomal protein, large, P1 (RPLP1) pseudogene 3.6585 0.0000
3 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 3.6349 0.0000
4 ENSG00000284135 MIR3654 microRNA 3654 3.5183 0.0000
5 ENSG00000214110 LDHAP4 lactate dehydrogenase A pseudogene 4 3.4771 0.0000
6 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 3.3655 0.0000
7 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 3.3474 0.0000
8 ENSG00000229132 EIF4A1P10 eukaryotic translation initiation factor 4A1 pseudogene 10 3.2549 0.0000
9 ENSG00000259169 GNRHR2P1 GNRHR2 pseudogene 1 3.2397 0.0000
10 ENSG00000234122 TRBV22OR9-2 T cell receptor beta variable 22/OR9-2 (pseudogene) 3.2197 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000171533 MAP6 microtubule associated protein 6 -1.3080 0.0000
63127 ENSG00000282556 novel transcript, antisense to PRKCDBP -1.3077 0.0000
63126 ENSG00000239305 RNF103 ring finger protein 103 -1.3076 0.0000
63125 ENSG00000168875 SOX14 SRY-box transcription factor 14 -1.3071 0.0000
63124 ENSG00000131668 BARX1 BARX homeobox 1 -1.3071 0.0000
63123 ENSG00000265801 novel transcript -1.3069 0.0000
63122 ENSG00000276100 NA -1.3069 0.0000
63121 ENSG00000214188 ST7-OT4 ST7 overlapping transcript 4 -1.3069 0.0000
63120 ENSG00000119042 SATB2 SATB homeobox 2 -1.3065 0.0000
63119 ENSG00000225280 novel transcript, antisense to NKX2-4 -1.3064 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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