SHOGoiN Cell Methylome: GSM2773592

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773592


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M219Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 4.0683 0.0000
2 ENSG00000218175 ribosomal protein, large, P1 (RPLP1) pseudogene 3.6585 0.0000
3 ENSG00000228519 RAN binding protein 1 pseudogene 3.6349 0.0000
4 ENSG00000284135 MIR3654 microRNA 3654 3.5183 0.0000
5 ENSG00000214110 LDHAP4 lactate dehydrogenase A pseudogene 4 3.4771 0.0000
6 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 3.3655 0.0000
7 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 3.3474 0.0000
8 ENSG00000229132 EIF4A1P10 eukaryotic translation initiation factor 4A1 pseudogene 10 3.2549 0.0000
9 ENSG00000259169 GNRHR2P1 GNRHR2 pseudogene 1 3.2397 0.0000
10 ENSG00000234122 TRBV22OR9-2 T cell receptor beta variable 22/OR9-2 (pseudogene) 3.2197 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000280219 TEC -1.3594 0.0000
63340 ENSG00000174279 EVX2 even-skipped homeobox 2 -1.3586 0.0000
63339 ENSG00000256879 novel transcript -1.3582 0.0000
63338 ENSG00000169851 PCDH7 protocadherin 7 -1.3582 0.0000
63337 ENSG00000122254 HS3ST2 heparan sulfate-glucosamine 3-sulfotransferase 2 -1.3580 0.0000
63336 ENSG00000173852 DPY19L1 dpy-19 like C-mannosyltransferase 1 -1.3580 0.0000
63335 ENSG00000258857 novel transcript -1.3579 0.0000
63334 ENSG00000255867 DENND5B-AS1 DENND5B antisense RNA 1 -1.3579 0.0000
63333 ENSG00000272121 novel transcript -1.3578 0.0000
63332 ENSG00000221949 LINC01465 long intergenic non-protein coding RNA 1465 -1.3574 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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