Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773593
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773593
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M220
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
2
ENSG00000249837
novel transcript
3.0000
0.0000
4
ENSG00000236958
novel transcript
2.8074
0.0000
5
ENSG00000242068
ring finger protein 13 (RNF13) pseudogene
2.8074
0.0000
6
ENSG00000249568
novel transcript
2.8074
0.0000
7
ENSG00000251816
RNA5SP157
RNA, 5S ribosomal pseudogene 157
2.8074
0.0000
8
ENSG00000259032
ENSAP2
endosulfine alpha pseudogene 2
2.8074
0.0000
9
ENSG00000267627
novel transcript
2.8074
0.0000
10
ENSG00000274631
IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) (IMMP1L) pseudogene
2.8074
0.0000
63119
ENSG00000112335
SNX3
sorting nexin 3
-2.0414
0.0000
63120
ENSG00000264655
PPIAP54
peptidylprolyl isomerase A pseudogene 54
-2.0420
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000166192
SENP8
SUMO peptidase family member, NEDD8 specific
-2.0449
0.0000
63127
ENSG00000168297
PXK
PX domain containing serine/threonine kinase like
-2.0447
0.0000
63126
ENSG00000225979
novel transcript
-2.0444
0.0000
63125
ENSG00000171385
KCND3
potassium voltage-gated channel subfamily D member 3
-2.0443
0.0000
63124
ENSG00000229225
novel transcript
-2.0439
0.0063
63123
ENSG00000277867
dexamethasone-induced transcript (DEXI) pseudogene
-2.0439
0.0000
63122
ENSG00000234122
TRBV22OR9-2
T cell receptor beta variable 22/OR9-2 (pseudogene)
-2.0439
0.0533
63121
ENSG00000271882
novel transcript
-2.0428
0.0000
63120
ENSG00000264655
PPIAP54
peptidylprolyl isomerase A pseudogene 54
-2.0420
0.0000
63119
ENSG00000112335
SNX3
sorting nexin 3
-2.0414
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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