Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773593

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773593


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M220Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
2 ENSG00000249837 novel transcript 3.0000 0.0000
4 ENSG00000236958 novel transcript 2.8074 0.0000
5 ENSG00000242068 ring finger protein 13 (RNF13) pseudogene 2.8074 0.0000
6 ENSG00000249568 novel transcript 2.8074 0.0000
7 ENSG00000251816 RNA5SP157 RNA, 5S ribosomal pseudogene 157 2.8074 0.0000
8 ENSG00000259032 ENSAP2 endosulfine alpha pseudogene 2 2.8074 0.0000
9 ENSG00000267627 novel transcript 2.8074 0.0000
10 ENSG00000274631 IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) (IMMP1L) pseudogene 2.8074 0.0000
63119 ENSG00000112335 SNX3 sorting nexin 3 -2.0414 0.0000
63120 ENSG00000264655 PPIAP54 peptidylprolyl isomerase A pseudogene 54 -2.0420 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000166192 SENP8 SUMO peptidase family member, NEDD8 specific -2.0449 0.0000
63127 ENSG00000168297 PXK PX domain containing serine/threonine kinase like -2.0447 0.0000
63126 ENSG00000225979 novel transcript -2.0444 0.0000
63125 ENSG00000171385 KCND3 potassium voltage-gated channel subfamily D member 3 -2.0443 0.0000
63124 ENSG00000229225 novel transcript -2.0439 0.0063
63123 ENSG00000277867 dexamethasone-induced transcript (DEXI) pseudogene -2.0439 0.0000
63122 ENSG00000234122 TRBV22OR9-2 T cell receptor beta variable 22/OR9-2 (pseudogene) -2.0439 0.0533
63121 ENSG00000271882 novel transcript -2.0428 0.0000
63120 ENSG00000264655 PPIAP54 peptidylprolyl isomerase A pseudogene 54 -2.0420 0.0000
63119 ENSG00000112335 SNX3 sorting nexin 3 -2.0414 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...