Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773593

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773593 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M220	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
2	ENSG00000249837		novel transcript	3.0000	0.0000
4	ENSG00000236958		novel transcript	2.8074	0.0000
5	ENSG00000242068		ring finger protein 13 (RNF13) pseudogene	2.8074	0.0000
6	ENSG00000249568		novel transcript	2.8074	0.0000
7	ENSG00000251816	RNA5SP157	RNA, 5S ribosomal pseudogene 157	2.8074	0.0000
8	ENSG00000259032	ENSAP2	endosulfine alpha pseudogene 2	2.8074	0.0000
9	ENSG00000267627		novel transcript	2.8074	0.0000
10	ENSG00000274631		IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) (IMMP1L) pseudogene	2.8074	0.0000
63119	ENSG00000112335	SNX3	sorting nexin 3	-2.0414	0.0000
63120	ENSG00000264655	PPIAP54	peptidylprolyl isomerase A pseudogene 54	-2.0420	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000166192	SENP8	SUMO peptidase family member, NEDD8 specific	-2.0449	0.0000
63127	ENSG00000168297	PXK	PX domain containing serine/threonine kinase like	-2.0447	0.0000
63126	ENSG00000225979		novel transcript	-2.0444	0.0000
63125	ENSG00000171385	KCND3	potassium voltage-gated channel subfamily D member 3	-2.0443	0.0000
63124	ENSG00000229225		novel transcript	-2.0439	0.0063
63123	ENSG00000277867		dexamethasone-induced transcript (DEXI) pseudogene	-2.0439	0.0000
63122	ENSG00000234122	TRBV22OR9-2	T cell receptor beta variable 22/OR9-2 (pseudogene)	-2.0439	0.0533
63121	ENSG00000271882		novel transcript	-2.0428	0.0000
63120	ENSG00000264655	PPIAP54	peptidylprolyl isomerase A pseudogene 54	-2.0420	0.0000
63119	ENSG00000112335	SNX3	sorting nexin 3	-2.0414	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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