Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773594

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773594


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M221Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000237381 NT5DC1P1 NT5DC1 pseudogene 1 2.0000 0.0038
2 ENSG00000241815 retinoblastoma binding protein 4 (RBBP4) pseudogene 1.5850 0.0244
3 ENSG00000252854 RN7SKP5 RN7SK pseudogene 5 1.3620 0.0000
4 ENSG00000265165 MIR4307 microRNA 4307 1.2925 0.0038
5 ENSG00000223809 novel transcript 1.2340 0.0000
6 ENSG00000199246 RNU6-896P RNA, U6 small nuclear 896, pseudogene 1.2264 0.0000
7 ENSG00000234158 RPEP2 ribulose-5-phosphate-3-epimerase pseudogene 2 1.1742 0.0000
8 ENSG00000259388 ring finger protein, LIM domain interacting (RLIM) pseudogene 1.1597 0.0000
9 ENSG00000280379 novel transcript 1.1170 0.0000
10 ENSG00000279000 OR10A6 olfactory receptor family 10 subfamily A member 6 (gene/pseudogene) 1.0585 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000168806 LCMT2 leucine carboxyl methyltransferase 2 -1.8049 0.0000
63127 ENSG00000255408 PCDHA3 protocadherin alpha 3 -1.8048 0.0000
63126 ENSG00000229068 TMPOP1 thymopoietin pseudogene 1 -1.8048 0.0000
63125 ENSG00000261114 novel transcript, sense intronic to HERPUD1 -1.8047 0.0000
63124 ENSG00000187984 ANKRD19P ankyrin repeat domain 19, pseudogene -1.8045 0.0000
63123 ENSG00000170604 IRF2BP1 interferon regulatory factor 2 binding protein 1 -1.8039 0.0000
63122 ENSG00000197557 TTC30A tetratricopeptide repeat domain 30A -1.8039 0.0000
63121 ENSG00000205250 E2F4 E2F transcription factor 4 -1.8037 0.0000
63120 ENSG00000271984 novel transcript, antisense to CTSA -1.8035 0.0000
63119 ENSG00000215117 LINC00588 long intergenic non-protein coding RNA 588 -1.8034 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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