SHOGoiN Cell Methylome: GSM2773594

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773594


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M221Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000237381 5'-nucleotidase, cytosolic II-like 1 (NT5C2L1) pseudogene 2.0000 0.0038
2 ENSG00000241815 retinoblastoma binding protein 4 (RBBP4) pseudogene 1.5850 0.0244
3 ENSG00000252854 RN7SKP5 RN7SK pseudogene 5 1.3620 0.0000
4 ENSG00000265165 MIR4307 microRNA 4307 1.2925 0.0038
5 ENSG00000223809 novel transcript 1.2340 0.0000
6 ENSG00000199246 RNU6-896P RNA, U6 small nuclear 896, pseudogene 1.2264 0.0000
7 ENSG00000234158 RPEP2 ribulose-5-phosphate-3-epimerase pseudogene 2 1.1742 0.0000
8 ENSG00000259388 ring finger protein, LIM domain interacting (RLIM) pseudogene 1.1597 0.0000
9 ENSG00000280379 novel transcript 1.1170 0.0000
10 ENSG00000279000 OR10A6 olfactory receptor family 10 subfamily A member 6 (gene/pseudogene) 1.0585 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000170743 SYT9 synaptotagmin 9 -1.8550 0.0000
63340 ENSG00000179751 SYCN syncollin -1.8549 0.0000
63339 ENSG00000161682 FAM171A2 family with sequence similarity 171 member A2 -1.8548 0.0000
63338 ENSG00000233844 KCNQ5-IT1 KCNQ5 intronic transcript 1 -1.8538 0.0000
63337 ENSG00000227527 novel transcript -1.8537 0.0000
63336 ENSG00000224875 novel transcript -1.8534 0.0000
63335 ENSG00000267778 novel transcript -1.8534 0.0000
63334 ENSG00000166595 CIAO2B cytosolic iron-sulfur assembly component 2B -1.8522 0.0000
63332 ENSG00000138136 LBX1 ladybird homeobox 1 -1.8508 0.0000
10 ENSG00000279000 OR10A6 olfactory receptor family 10 subfamily A member 6 (gene/pseudogene) 1.0585 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...