SHOGoiN Cell Methylome: GSM2773595

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773595


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M222Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000261081 amyloid beta (A4) precursor protein-binding, family A, member 2 (APBA2) pseudogene 2.0000 0.0000
2 ENSG00000264131 novel transcript 2.0000 0.0035
3 ENSG00000249038 AARSP1 alanyl-tRNA synthetase pseudogene 1 1.8617 0.0000
4 ENSG00000256981 taste receptor, type 2, member 18 pseudogene 1.6610 0.0001
5 ENSG00000218410 pseudogene similar to primate FRD envelope proteins (ENVFRD) 1.5850 0.0232
6 ENSG00000241723 ribosomal protein L15 (RPL15) pseudogene 1.5850 0.0000
7 ENSG00000259149 novel transcript 1.5850 0.0232
8 ENSG00000219627 CYCSP17 CYCS pseudogene 17 1.4783 0.0000
9 ENSG00000238122 novel transcript 1.4680 0.0000
10 ENSG00000271679 LSM1P2 LSM1 homolog, mRNA degradation associated pseudogene 2 1.3397 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000132603 NIP7 nucleolar pre-rRNA processing protein NIP7 -1.8749 0.0000
63340 ENSG00000233844 KCNQ5-IT1 KCNQ5 intronic transcript 1 -1.8748 0.0000
63339 ENSG00000107821 KAZALD1 Kazal type serine peptidase inhibitor domain 1 -1.8747 0.0000
63338 ENSG00000106511 MEOX2 mesenchyme homeobox 2 -1.8743 0.0000
63337 ENSG00000182183 SHISAL2A shisa like 2A -1.8742 0.0000
63336 ENSG00000265393 novel transcript, antisense to RECQL4 -1.8741 0.0000
63335 ENSG00000258643 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough -1.8736 0.0000
63334 ENSG00000206538 VGLL3 vestigial like family member 3 -1.8735 0.0000
63333 ENSG00000253620 family with sequence similarity 41, member C (FAM41C) pseudogene -1.8730 0.0388
63332 ENSG00000234224 TMEM229A transmembrane protein 229A -1.8728 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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