Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773595

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773595 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M222	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000261081		amyloid beta (A4) precursor protein-binding, family A, member 2 (APBA2) pseudogene	2.0000	0.0000
2	ENSG00000264131		novel transcript	2.0000	0.0035
3	ENSG00000249038	AARS1P1	alanyl-tRNA synthetase 1 pseudogene 1	1.8617	0.0000
4	ENSG00000256981		taste receptor, type 2, member 18 pseudogene	1.6610	0.0001
5	ENSG00000218410		pseudogene similar to primate FRD envelope proteins (ENVFRD)	1.5850	0.0232
6	ENSG00000241723		ribosomal protein L15 (RPL15) pseudogene	1.5850	0.0000
7	ENSG00000259149		novel transcript	1.5850	0.0232
8	ENSG00000219627	CYCSP17	CYCS pseudogene 17	1.4783	0.0000
9	ENSG00000238122		novel transcript	1.4680	0.0000
10	ENSG00000271679	LSM1P2	LSM1 homolog, mRNA degradation associated pseudogene 2	1.3397	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000250321		pseudogene similar to part of ribosomal protein S17 (RPS17)	-1.8225	0.0000
63127	ENSG00000221464	MIR1271	microRNA 1271	-1.8224	0.0000
63126	ENSG00000274060	MIR6724-2	microRNA 6724-2	-1.8222	0.0000
63125	ENSG00000258413		novel transcript	-1.8221	0.0000
63124	ENSG00000188803	SHISA6	shisa family member 6	-1.8220	0.0000
63123	ENSG00000278965		tec	-1.8220	0.0000
63122	ENSG00000278936		novel transcript, antisense to PCDHB16, PCDHB9, PCDHB10 and PCDHB11	-1.8218	0.0000
63121	ENSG00000280414		novel transcript	-1.8218	0.0000
63120	ENSG00000272321		novel transcript, antisense to STK3	-1.8217	0.0000
63119	ENSG00000253878		novel transcript	-1.8216	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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