Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773595
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773595
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M222
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000261081
amyloid beta (A4) precursor protein-binding, family A, member 2 (APBA2) pseudogene
2.0000
0.0000
2
ENSG00000264131
novel transcript
2.0000
0.0035
3
ENSG00000249038
AARS1P1
alanyl-tRNA synthetase 1 pseudogene 1
1.8617
0.0000
4
ENSG00000256981
taste receptor, type 2, member 18 pseudogene
1.6610
0.0001
5
ENSG00000218410
pseudogene similar to primate FRD envelope proteins (ENVFRD)
1.5850
0.0232
6
ENSG00000241723
ribosomal protein L15 (RPL15) pseudogene
1.5850
0.0000
7
ENSG00000259149
novel transcript
1.5850
0.0232
8
ENSG00000219627
CYCSP17
CYCS pseudogene 17
1.4783
0.0000
9
ENSG00000238122
novel transcript
1.4680
0.0000
10
ENSG00000271679
LSM1P2
LSM1 homolog, mRNA degradation associated pseudogene 2
1.3397
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000250321
pseudogene similar to part of ribosomal protein S17 (RPS17)
-1.8225
0.0000
63127
ENSG00000221464
MIR1271
microRNA 1271
-1.8224
0.0000
63126
ENSG00000274060
MIR6724-2
microRNA 6724-2
-1.8222
0.0000
63125
ENSG00000258413
novel transcript
-1.8221
0.0000
63124
ENSG00000188803
SHISA6
shisa family member 6
-1.8220
0.0000
63123
ENSG00000278965
tec
-1.8220
0.0000
63122
ENSG00000278936
novel transcript, antisense to PCDHB16, PCDHB9, PCDHB10 and PCDHB11
-1.8218
0.0000
63121
ENSG00000280414
novel transcript
-1.8218
0.0000
63120
ENSG00000272321
novel transcript, antisense to STK3
-1.8217
0.0000
63119
ENSG00000253878
novel transcript
-1.8216
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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