Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773595

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773595


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M222Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000261081 amyloid beta (A4) precursor protein-binding, family A, member 2 (APBA2) pseudogene 2.0000 0.0000
2 ENSG00000264131 novel transcript 2.0000 0.0035
3 ENSG00000249038 AARS1P1 alanyl-tRNA synthetase 1 pseudogene 1 1.8617 0.0000
4 ENSG00000256981 taste receptor, type 2, member 18 pseudogene 1.6610 0.0001
5 ENSG00000218410 pseudogene similar to primate FRD envelope proteins (ENVFRD) 1.5850 0.0232
6 ENSG00000241723 ribosomal protein L15 (RPL15) pseudogene 1.5850 0.0000
7 ENSG00000259149 novel transcript 1.5850 0.0232
8 ENSG00000219627 CYCSP17 CYCS pseudogene 17 1.4783 0.0000
9 ENSG00000238122 novel transcript 1.4680 0.0000
10 ENSG00000271679 LSM1P2 LSM1 homolog, mRNA degradation associated pseudogene 2 1.3397 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000250321 pseudogene similar to part of ribosomal protein S17 (RPS17) -1.8225 0.0000
63127 ENSG00000221464 MIR1271 microRNA 1271 -1.8224 0.0000
63126 ENSG00000274060 MIR6724-2 microRNA 6724-2 -1.8222 0.0000
63125 ENSG00000258413 novel transcript -1.8221 0.0000
63124 ENSG00000188803 SHISA6 shisa family member 6 -1.8220 0.0000
63123 ENSG00000278965 tec -1.8220 0.0000
63122 ENSG00000278936 novel transcript, antisense to PCDHB16, PCDHB9, PCDHB10 and PCDHB11 -1.8218 0.0000
63121 ENSG00000280414 novel transcript -1.8218 0.0000
63120 ENSG00000272321 novel transcript, antisense to STK3 -1.8217 0.0000
63119 ENSG00000253878 novel transcript -1.8216 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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