SHOGoiN Cell Methylome: GSM2773595
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773595 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M222 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000261081 | amyloid beta (A4) precursor protein-binding, family A, member 2 (APBA2) pseudogene | 2.0000 | 0.0000 | |
| 2 | ENSG00000264131 | novel transcript | 2.0000 | 0.0035 | |
| 3 | ENSG00000249038 | AARSP1 | alanyl-tRNA synthetase pseudogene 1 | 1.8617 | 0.0000 |
| 4 | ENSG00000256981 | taste receptor, type 2, member 18 pseudogene | 1.6610 | 0.0001 | |
| 5 | ENSG00000218410 | pseudogene similar to primate FRD envelope proteins (ENVFRD) | 1.5850 | 0.0232 | |
| 6 | ENSG00000241723 | ribosomal protein L15 (RPL15) pseudogene | 1.5850 | 0.0000 | |
| 7 | ENSG00000259149 | novel transcript | 1.5850 | 0.0232 | |
| 8 | ENSG00000219627 | CYCSP17 | CYCS pseudogene 17 | 1.4783 | 0.0000 |
| 9 | ENSG00000238122 | novel transcript | 1.4680 | 0.0000 | |
| 10 | ENSG00000271679 | LSM1P2 | LSM1 homolog, mRNA degradation associated pseudogene 2 | 1.3397 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000132603 | NIP7 | nucleolar pre-rRNA processing protein NIP7 | -1.8749 | 0.0000 |
| 63340 | ENSG00000233844 | KCNQ5-IT1 | KCNQ5 intronic transcript 1 | -1.8748 | 0.0000 |
| 63339 | ENSG00000107821 | KAZALD1 | Kazal type serine peptidase inhibitor domain 1 | -1.8747 | 0.0000 |
| 63338 | ENSG00000106511 | MEOX2 | mesenchyme homeobox 2 | -1.8743 | 0.0000 |
| 63337 | ENSG00000182183 | SHISAL2A | shisa like 2A | -1.8742 | 0.0000 |
| 63336 | ENSG00000265393 | novel transcript, antisense to RECQL4 | -1.8741 | 0.0000 | |
| 63335 | ENSG00000258643 | BCL2L2-PABPN1 | BCL2L2-PABPN1 readthrough | -1.8736 | 0.0000 |
| 63334 | ENSG00000206538 | VGLL3 | vestigial like family member 3 | -1.8735 | 0.0000 |
| 63333 | ENSG00000253620 | family with sequence similarity 41, member C (FAM41C) pseudogene | -1.8730 | 0.0388 | |
| 63332 | ENSG00000234224 | TMEM229A | transmembrane protein 229A | -1.8728 | 0.0000 |
