Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773596

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773596


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M223Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253401 VTA1P2 vesicle trafficking 1 pseudogene 2 2.5850 0.0000
2 ENSG00000124657 OR2B6 olfactory receptor family 2 subfamily B member 6 2.3219 0.0004
3 ENSG00000249564 novel pseudogene 2.3219 0.0004
4 ENSG00000266126 novel transcript 2.2925 0.0000
5 ENSG00000241406 RN7SL515P RNA, 7SL, cytoplasmic 515, pseudogene 2.1610 0.0000
6 ENSG00000227965 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) (LSM5) pseudogene 2.0572 0.0000
7 ENSG00000199455 RNA5SP191 RNA, 5S ribosomal pseudogene 191 2.0000 0.0000
8 ENSG00000201892 Y RNA 2.0000 0.0000
9 ENSG00000204021 LIPK lipase family member K 2.0000 0.0029
10 ENSG00000222078 RN7SKP110 RN7SK pseudogene 110 2.0000 0.0029

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000231219 PRAMEF32P PRAME family member 32, pseudogene -1.8686 0.0000
63127 ENSG00000269043 novel transcript -1.8680 0.0001
63126 ENSG00000244280 ECEL1P2 endothelin converting enzyme like 1 pseudogene 2 -1.8676 0.0000
63125 ENSG00000228421 novel transcript -1.8670 0.0000
63124 ENSG00000271555 novel transcript, sense intronic KANK1 -1.8667 0.0000
63123 ENSG00000198753 PLXNB3 plexin B3 -1.8666 0.0000
63122 ENSG00000180581 SRP9P1 signal recognition particle 9 pseudogene 1 -1.8656 0.0000
63121 ENSG00000229644 NAMPTP1 nicotinamide phosphoribosyltransferase pseudogene 1 -1.8656 0.0405
63120 ENSG00000207569 MIR433 microRNA 433 -1.8655 0.0000
63119 ENSG00000276530 NA -1.8654 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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