SHOGoiN Cell Methylome: GSM2773596

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773596


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M223Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253401 VTA1P2 vesicle trafficking 1 pseudogene 2 2.5850 0.0000
2 ENSG00000124657 OR2B6 olfactory receptor family 2 subfamily B member 6 2.3219 0.0004
3 ENSG00000249564 novel pseudogene 2.3219 0.0004
4 ENSG00000266126 novel transcript 2.2925 0.0000
5 ENSG00000241406 RN7SL515P RNA, 7SL, cytoplasmic 515, pseudogene 2.1610 0.0000
6 ENSG00000227965 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) (LSM5) pseudogene 2.0572 0.0000
7 ENSG00000199455 RNA5SP191 RNA, 5S ribosomal pseudogene 191 2.0000 0.0000
8 ENSG00000201892 NA 2.0000 0.0000
9 ENSG00000204021 LIPK lipase family member K 2.0000 0.0029
10 ENSG00000222078 RN7SKP110 RN7SK pseudogene 110 2.0000 0.0029

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000229391 HLA-DRB6 major histocompatibility complex, class II, DR beta 6 (pseudogene) -1.9274 0.0278
63340 ENSG00000256609 novel transcript -1.9270 0.0000
63339 ENSG00000272717 novel transcript, antisense to SETD7 -1.9268 0.0000
63338 ENSG00000243479 MNX1-AS1 MNX1 antisense RNA 1 (head to head) -1.9266 0.0000
63337 ENSG00000279813 TEC -1.9261 0.0000
63336 ENSG00000031691 CENPQ centromere protein Q -1.9261 0.0018
63335 ENSG00000253309 SERPINE3 serpin family E member 3 -1.9260 0.0000
63334 ENSG00000231908 IDH1-AS1 IDH1 antisense RNA 1 -1.9256 0.0000
63333 ENSG00000213548 PPIAP81 peptidylprolyl isomerase A pseudogene 81 -1.9255 0.0000
63332 ENSG00000124900 TRIM51 tripartite motif-containing 51 -1.9254 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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