Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773597

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773597


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M224Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000222921 RNA5SP104 RNA, 5S ribosomal pseudogene 104 2.7459 0.0000
2 ENSG00000249839 histidine acid phosphatase domain containing 2A (HISPPD2A) pseudogene 2.5850 0.0001
3 ENSG00000277914 DDX6P2 DEAD-box helicase 6 pseudogene 2 2.5850 0.0001
4 ENSG00000201491 RNU4-75P RNA, U4 small nuclear 75, pseudogene 2.3219 0.0000
5 ENSG00000221245 NA 2.3219 0.0000
6 ENSG00000270323 CTAGE family, member 5 (CTAGE5) pseudogene 2.3219 0.0000
7 ENSG00000223738 heat shock protein 90kDa alpha (cytosolic), class B member 1 (HSP90AB1) pseudogene 2.2759 0.0000
8 ENSG00000224698 novel transcript 2.0000 0.0050
9 ENSG00000238118 SLC25A24P2 SLC25A24 pseudogene 2 2.0000 0.0050
10 ENSG00000241667 novel transcript 2.0000 0.0050

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000231663 COA6-AS1 COA6 antisense RNA 1 -1.8363 0.0000
63127 ENSG00000130755 GMFG glia maturation factor gamma -1.8361 0.0000
63126 ENSG00000171791 BCL2 BCL2 apoptosis regulator -1.8360 0.0000
63125 ENSG00000224980 RPL23AP85 ribosomal protein L23a pseudogene 85 -1.8359 0.0000
63124 ENSG00000282936 novel protein -1.8352 0.0000
63123 ENSG00000261052 SULT1A3 sulfotransferase family 1A member 3 -1.8349 0.0000
63122 ENSG00000250360 novel transcript -1.8347 0.0000
63121 ENSG00000272031 ANKRD34A ankyrin repeat domain 34A -1.8346 0.0000
63120 ENSG00000230707 novel protein (LOC389895) -1.8344 0.0000
63119 ENSG00000238102 novel transcript -1.8340 0.1437

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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