SHOGoiN Cell Methylome: GSM2773597

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773597


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M224Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000222921 RNA5SP104 RNA, 5S ribosomal pseudogene 104 2.7459 0.0000
2 ENSG00000249839 histidine acid phosphatase domain containing 2A (HISPPD2A) pseudogene 2.5850 0.0001
3 ENSG00000277914 DDX6P2 DEAD-box helicase 6 pseudogene 2 2.5850 0.0001
4 ENSG00000201491 RNU4-75P RNA, U4 small nuclear 75, pseudogene 2.3219 0.0000
5 ENSG00000221245 NA 2.3219 0.0000
6 ENSG00000270323 CTAGE family, member 5 (CTAGE5) pseudogene 2.3219 0.0000
7 ENSG00000223738 heat shock protein 90kDa alpha (cytosolic), class B member 1 (HSP90AB1) pseudogene 2.2759 0.0000
8 ENSG00000224698 novel transcript 2.0000 0.0050
9 ENSG00000238118 SLC25A24P2 SLC25A24 pseudogene 2 2.0000 0.0050
10 ENSG00000241667 novel transcript 2.0000 0.0050

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000214290 COLCA2 colorectal cancer associated 2 -1.9002 0.0000
63340 ENSG00000227910 TP53 target 3 (TP53TG3) pseudogene -1.8991 0.0000
63339 ENSG00000270959 LPP-AS2 LPP antisense RNA 2 -1.8988 0.0000
63338 ENSG00000239389 PCDHA13 protocadherin alpha 13 -1.8988 0.0000
63337 ENSG00000249965 CDC42P4 cell division cycle 42 pseudogene 4 -1.8986 0.0001
63336 ENSG00000225094 SETP20 SET pseudogene 20 -1.8986 0.0001
63335 ENSG00000235173 HGH1 HGH1 homolog -1.8984 0.0000
63334 ENSG00000228417 novel transcript -1.8983 0.0000
63333 ENSG00000245857 novel transcript -1.8982 0.0000
63332 ENSG00000160951 PTGER1 prostaglandin E receptor 1 -1.8981 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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