Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773598

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773598


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M225Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230926 pseudogene similar to part of SAH (SA hypertension-associated homolog (rat)) 2.5850 0.0007
2 ENSG00000205330 OR6C1 olfactory receptor family 6 subfamily C member 1 2.3219 0.0000
3 ENSG00000266712 MIR3149 microRNA 3149 2.3219 0.0000
4 ENSG00000278894 TEC 2.3219 0.0000
5 ENSG00000199270 RNA5S12 RNA, 5S ribosomal 12 2.2730 0.0000
6 ENSG00000228120 novel transcript 2.1761 0.0000
7 ENSG00000199334 RNA5S11 RNA, 5S ribosomal 11 2.1720 0.0000
8 ENSG00000203825 phosphodiesterase 4D interacting protein (myomegalin) (PDE4DIP) pseudogene 2.1610 0.0000
10 ENSG00000243508 DNAJB6P7 DNAJB6 pseudogene 7 2.0850 0.0000
63119 ENSG00000235086 FNDC1-IT1 FNDC1 intronic transcript 1 -1.5200 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000255186 novel transcript -1.5213 0.0000
63127 ENSG00000213985 ARP2 actin-related protein 2 homolog (yeast) (ACTR2) pseudogene -1.5212 0.0323
63126 ENSG00000248347 POTE ankyrin domain family pseudogene -1.5212 0.0000
63125 ENSG00000278909 novel transcript -1.5211 0.0000
63124 ENSG00000270259 DSN1, MIND kinetochore complex component, homolog (S. cerevisiae) (DSN1) pseudogene -1.5211 0.0000
63123 ENSG00000281358 RASSF1-AS1 RASSF1 antisense RNA 1 -1.5209 0.0000
63122 ENSG00000246375 PPM1K-DT PPM1K divergent transcript -1.5209 0.0000
63121 ENSG00000135766 EGLN1 egl-9 family hypoxia inducible factor 1 -1.5206 0.0000
63120 ENSG00000273188 novel transcript, antisense to TRABD -1.5200 0.0000
63119 ENSG00000235086 FNDC1-IT1 FNDC1 intronic transcript 1 -1.5200 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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