SHOGoiN Cell Methylome: GSM2773598

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773598


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M225Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230926 pseudogene similar to part of SAH (SA hypertension-associated homolog (rat)) 2.5850 0.0007
2 ENSG00000205330 OR6C1 olfactory receptor family 6 subfamily C member 1 2.3219 0.0000
3 ENSG00000266712 MIR3149 microRNA 3149 2.3219 0.0000
4 ENSG00000278894 TEC 2.3219 0.0000
5 ENSG00000199270 RNA5S12 RNA, 5S ribosomal 12 2.2730 0.0000
6 ENSG00000228120 novel transcript 2.1761 0.0000
7 ENSG00000199334 RNA5S11 RNA, 5S ribosomal 11 2.1720 0.0000
8 ENSG00000203825 phosphodiesterase 4D interacting protein (myomegalin) (PDE4DIP) pseudogene 2.1610 0.0000
10 ENSG00000243508 DnaJ (Hsp40) homolog, subfamily B, member 6 (DNAJB6) pseudogene 2.0850 0.0000
63332 ENSG00000163661 PTX3 pentraxin 3 -1.5850 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000188985 DHFRP1 dihydrofolate reductase pseudogene 1 -1.5850 0.1303
63340 ENSG00000188171 ZNF626 zinc finger protein 626 -1.5850 1.0000
63339 ENSG00000187223 LCE2D late cornified envelope 2D -1.5850 1.0000
63338 ENSG00000186743 TPI1P3 triosephosphate isomerase 1 pseudogene 3 -1.5850 0.5794
63337 ENSG00000184148 SPRR4 small proline rich protein 4 -1.5850 1.0000
63336 ENSG00000179104 TMTC2 transmembrane and tetratricopeptide repeat containing 2 -1.5850 0.0116
63335 ENSG00000174495 PPIAP80 peptidylprolyl isomerase A pseudogene 80 -1.5850 0.5794
63334 ENSG00000169508 GPR183 G protein-coupled receptor 183 -1.5850 0.5794
63333 ENSG00000168582 CRYGA crystallin gamma A -1.5850 1.0000
63332 ENSG00000163661 PTX3 pentraxin 3 -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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