SHOGoiN Cell Methylome: GSM2773599

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773599


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M226Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000232809 VDAC1P10 voltage dependent anion channel 1 pseudogene 10 2.5850 0.0000
2 ENSG00000256315 novel transcript 2.5850 0.0000
3 ENSG00000276963 ankyrin repeat domain 30B (ANKRD30B) pseudogene 2.5850 0.0000
4 ENSG00000214429 CYCSP6 CYCS pseudogene 6 2.3920 0.0000
5 ENSG00000264997 NA 2.3774 0.0000
6 ENSG00000222154 RN7SKP218 RN7SK pseudogene 218 2.3219 0.0003
7 ENSG00000231022 RPS3AP9 ribosomal protein S3a pseudogene 9 2.3219 0.0003
8 ENSG00000248185 dedicator of cytokinesis family pseudogene 2.3219 0.0000
9 ENSG00000249102 novel transcript 2.3219 0.0000
10 ENSG00000250437 LINC02161 long intergenic non-protein coding RNA 2161 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000266522 chromosome 9 open reading frame 86 pseudogene -2.0839 0.0000
63339 ENSG00000277422 REXO1L6P REXO1 like 6, pseudogene -2.0836 0.0782
63338 ENSG00000179148 ALOXE3 arachidonate lipoxygenase 3 -2.0835 0.0000
63337 ENSG00000272554 novel transcript -2.0834 0.0000
63336 ENSG00000184709 LRRC26 leucine rich repeat containing 26 -2.0827 0.0000
63335 ENSG00000236816 ANKRD20A7P ankyrin repeat domain 20 family member A7, pseudogene -2.0824 0.0000
63334 ENSG00000224418 STK24-AS1 STK24 antisense RNA 1 -2.0823 0.0000
63333 ENSG00000275793 RIMBP3 RIMS binding protein 3 -2.0814 0.0000
63332 ENSG00000265304 MIR3650 microRNA 3650 -2.0811 0.0000
10 ENSG00000250437 LINC02161 long intergenic non-protein coding RNA 2161 2.3219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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