Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773599

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773599 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M226	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000232809	VDAC1P10	voltage dependent anion channel 1 pseudogene 10	2.5850	0.0000
2	ENSG00000256315		novel transcript	2.5850	0.0000
3	ENSG00000276963		ankyrin repeat domain 30B (ANKRD30B) pseudogene	2.5850	0.0000
4	ENSG00000214429	CYCSP6	CYCS pseudogene 6	2.3920	0.0000
5	ENSG00000264997		Small nucleolar RNA SNORD55/SNORD39	2.3774	0.0000
6	ENSG00000222154	RN7SKP218	RN7SK pseudogene 218	2.3219	0.0003
7	ENSG00000231022	RPS3AP9	RPS3A pseudogene 9	2.3219	0.0003
8	ENSG00000248185		dedicator of cytokinesis family pseudogene	2.3219	0.0000
9	ENSG00000249102		novel transcript	2.3219	0.0000
10	ENSG00000250437	LINC02161	long intergenic non-protein coding RNA 2161	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000171204	TMEM126B	transmembrane protein 126B	-2.0204	0.0000
63127	ENSG00000197191	CYSRT1	cysteine rich tail 1	-2.0197	0.0000
63126	ENSG00000054148	PHPT1	phosphohistidine phosphatase 1	-2.0197	0.0000
63125	ENSG00000197406	DIO3	iodothyronine deiodinase 3	-2.0196	0.0000
63124	ENSG00000283461	MIR550B2	microRNA 550b-2	-2.0190	0.0000
63123	ENSG00000269893	SNHG8	small nucleolar RNA host gene 8	-2.0190	0.0000
63122	ENSG00000261360	OTULIN-DT	OTULIN divergent transcript	-2.0190	0.0000
63121	ENSG00000263859		novel transcript	-2.0190	0.0000
63120	ENSG00000275362		Metazoan signal recognition particle RNA	-2.0186	0.0000
63119	ENSG00000184292	TACSTD2	tumor associated calcium signal transducer 2	-2.0184	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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