SHOGoiN Cell Methylome: GSM2773599
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773599 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M226 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000232809 | VDAC1P10 | voltage dependent anion channel 1 pseudogene 10 | 2.5850 | 0.0000 |
| 2 | ENSG00000256315 | novel transcript | 2.5850 | 0.0000 | |
| 3 | ENSG00000276963 | ankyrin repeat domain 30B (ANKRD30B) pseudogene | 2.5850 | 0.0000 | |
| 4 | ENSG00000214429 | CYCSP6 | CYCS pseudogene 6 | 2.3920 | 0.0000 |
| 5 | ENSG00000264997 | NA | 2.3774 | 0.0000 | |
| 6 | ENSG00000222154 | RN7SKP218 | RN7SK pseudogene 218 | 2.3219 | 0.0003 |
| 7 | ENSG00000231022 | RPS3AP9 | ribosomal protein S3a pseudogene 9 | 2.3219 | 0.0003 |
| 8 | ENSG00000248185 | dedicator of cytokinesis family pseudogene | 2.3219 | 0.0000 | |
| 9 | ENSG00000249102 | novel transcript | 2.3219 | 0.0000 | |
| 10 | ENSG00000250437 | LINC02161 | long intergenic non-protein coding RNA 2161 | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000266522 | chromosome 9 open reading frame 86 pseudogene | -2.0839 | 0.0000 | |
| 63339 | ENSG00000277422 | REXO1L6P | REXO1 like 6, pseudogene | -2.0836 | 0.0782 |
| 63338 | ENSG00000179148 | ALOXE3 | arachidonate lipoxygenase 3 | -2.0835 | 0.0000 |
| 63337 | ENSG00000272554 | novel transcript | -2.0834 | 0.0000 | |
| 63336 | ENSG00000184709 | LRRC26 | leucine rich repeat containing 26 | -2.0827 | 0.0000 |
| 63335 | ENSG00000236816 | ANKRD20A7P | ankyrin repeat domain 20 family member A7, pseudogene | -2.0824 | 0.0000 |
| 63334 | ENSG00000224418 | STK24-AS1 | STK24 antisense RNA 1 | -2.0823 | 0.0000 |
| 63333 | ENSG00000275793 | RIMBP3 | RIMS binding protein 3 | -2.0814 | 0.0000 |
| 63332 | ENSG00000265304 | MIR3650 | microRNA 3650 | -2.0811 | 0.0000 |
| 10 | ENSG00000250437 | LINC02161 | long intergenic non-protein coding RNA 2161 | 2.3219 | 0.0000 |
