Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773599
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773599
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M226
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000232809
VDAC1P10
voltage dependent anion channel 1 pseudogene 10
2.5850
0.0000
2
ENSG00000256315
novel transcript
2.5850
0.0000
3
ENSG00000276963
ankyrin repeat domain 30B (ANKRD30B) pseudogene
2.5850
0.0000
4
ENSG00000214429
CYCSP6
CYCS pseudogene 6
2.3920
0.0000
5
ENSG00000264997
Small nucleolar RNA SNORD55/SNORD39
2.3774
0.0000
6
ENSG00000222154
RN7SKP218
RN7SK pseudogene 218
2.3219
0.0003
7
ENSG00000231022
RPS3AP9
RPS3A pseudogene 9
2.3219
0.0003
8
ENSG00000248185
dedicator of cytokinesis family pseudogene
2.3219
0.0000
9
ENSG00000249102
novel transcript
2.3219
0.0000
10
ENSG00000250437
LINC02161
long intergenic non-protein coding RNA 2161
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000171204
TMEM126B
transmembrane protein 126B
-2.0204
0.0000
63127
ENSG00000197191
CYSRT1
cysteine rich tail 1
-2.0197
0.0000
63126
ENSG00000054148
PHPT1
phosphohistidine phosphatase 1
-2.0197
0.0000
63125
ENSG00000197406
DIO3
iodothyronine deiodinase 3
-2.0196
0.0000
63124
ENSG00000283461
MIR550B2
microRNA 550b-2
-2.0190
0.0000
63123
ENSG00000269893
SNHG8
small nucleolar RNA host gene 8
-2.0190
0.0000
63122
ENSG00000261360
OTULIN-DT
OTULIN divergent transcript
-2.0190
0.0000
63121
ENSG00000263859
novel transcript
-2.0190
0.0000
63120
ENSG00000275362
Metazoan signal recognition particle RNA
-2.0186
0.0000
63119
ENSG00000184292
TACSTD2
tumor associated calcium signal transducer 2
-2.0184
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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