Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773599

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773599


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M226Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000232809 VDAC1P10 voltage dependent anion channel 1 pseudogene 10 2.5850 0.0000
2 ENSG00000256315 novel transcript 2.5850 0.0000
3 ENSG00000276963 ankyrin repeat domain 30B (ANKRD30B) pseudogene 2.5850 0.0000
4 ENSG00000214429 CYCSP6 CYCS pseudogene 6 2.3920 0.0000
5 ENSG00000264997 Small nucleolar RNA SNORD55/SNORD39 2.3774 0.0000
6 ENSG00000222154 RN7SKP218 RN7SK pseudogene 218 2.3219 0.0003
7 ENSG00000231022 RPS3AP9 RPS3A pseudogene 9 2.3219 0.0003
8 ENSG00000248185 dedicator of cytokinesis family pseudogene 2.3219 0.0000
9 ENSG00000249102 novel transcript 2.3219 0.0000
10 ENSG00000250437 LINC02161 long intergenic non-protein coding RNA 2161 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000171204 TMEM126B transmembrane protein 126B -2.0204 0.0000
63127 ENSG00000197191 CYSRT1 cysteine rich tail 1 -2.0197 0.0000
63126 ENSG00000054148 PHPT1 phosphohistidine phosphatase 1 -2.0197 0.0000
63125 ENSG00000197406 DIO3 iodothyronine deiodinase 3 -2.0196 0.0000
63124 ENSG00000283461 MIR550B2 microRNA 550b-2 -2.0190 0.0000
63123 ENSG00000269893 SNHG8 small nucleolar RNA host gene 8 -2.0190 0.0000
63122 ENSG00000261360 OTULIN-DT OTULIN divergent transcript -2.0190 0.0000
63121 ENSG00000263859 novel transcript -2.0190 0.0000
63120 ENSG00000275362 Metazoan signal recognition particle RNA -2.0186 0.0000
63119 ENSG00000184292 TACSTD2 tumor associated calcium signal transducer 2 -2.0184 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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