Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773600
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773600
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M227
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000259941
novel transcript
2.3219
0.0003
2
ENSG00000235833
coiled-coil domain containing 144C (CCDC144C) pseudogene
2.0763
0.0000
3
ENSG00000196403
OR10D1P
olfactory receptor family 10 subfamily D member 1 pseudogene
2.0000
0.0023
4
ENSG00000242072
novel transcript
2.0000
0.0023
5
ENSG00000198406
BZW1P2
basic leucine zipper and W2 domains 1 pseudogene 2
1.7925
0.0000
6
ENSG00000183631
PRR32
proline rich 32
1.5850
0.0177
7
ENSG00000225912
RPL26P36
ribosomal protein L26 pseudogene 36
1.5850
0.0177
8
ENSG00000227785
leukemia NUP98 fusion partner 1 (LNP1) pseudogene
1.5850
0.0177
10
ENSG00000235511
OFD1P18Y
OFD1 pseudogene 18 Y-linked
1.5850
0.0177
63119
ENSG00000229344
MTCO2P12
MT-CO2 pseudogene 12
-1.8907
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000102109
PCSK1N
proprotein convertase subtilisin/kexin type 1 inhibitor
-1.8932
0.0000
63127
ENSG00000164088
PPM1M
protein phosphatase, Mg2+/Mn2+ dependent 1M
-1.8929
0.0000
63126
ENSG00000179044
EXOC3L1
exocyst complex component 3 like 1
-1.8928
0.0000
63125
ENSG00000235390
high mobility group nucleosomal binding domain 2 (HMGN2) pseudogene
-1.8927
0.0000
63124
ENSG00000175305
CCNE2
cyclin E2
-1.8924
0.0000
63123
ENSG00000239182
NA
-1.8923
0.0034
63122
ENSG00000177468
OLIG3
oligodendrocyte transcription factor 3
-1.8919
0.0000
63121
ENSG00000213225
NOC2LP1
NOC2 like nucleolar associated transcriptional repressor pseudogene 1
-1.8909
0.0000
63120
ENSG00000233708
epidermodysplasia verruciformis 1 (EVER1) pseudogene
-1.8908
0.0000
63119
ENSG00000229344
MTCO2P12
MT-CO2 pseudogene 12
-1.8907
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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