Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773600

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773600


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M227Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259941 novel transcript 2.3219 0.0003
2 ENSG00000235833 coiled-coil domain containing 144C (CCDC144C) pseudogene 2.0763 0.0000
3 ENSG00000196403 OR10D1P olfactory receptor family 10 subfamily D member 1 pseudogene 2.0000 0.0023
4 ENSG00000242072 novel transcript 2.0000 0.0023
5 ENSG00000198406 BZW1P2 basic leucine zipper and W2 domains 1 pseudogene 2 1.7925 0.0000
6 ENSG00000183631 PRR32 proline rich 32 1.5850 0.0177
7 ENSG00000225912 RPL26P36 ribosomal protein L26 pseudogene 36 1.5850 0.0177
8 ENSG00000227785 leukemia NUP98 fusion partner 1 (LNP1) pseudogene 1.5850 0.0177
10 ENSG00000235511 OFD1P18Y OFD1 pseudogene 18 Y-linked 1.5850 0.0177
63119 ENSG00000229344 MTCO2P12 MT-CO2 pseudogene 12 -1.8907 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000102109 PCSK1N proprotein convertase subtilisin/kexin type 1 inhibitor -1.8932 0.0000
63127 ENSG00000164088 PPM1M protein phosphatase, Mg2+/Mn2+ dependent 1M -1.8929 0.0000
63126 ENSG00000179044 EXOC3L1 exocyst complex component 3 like 1 -1.8928 0.0000
63125 ENSG00000235390 high mobility group nucleosomal binding domain 2 (HMGN2) pseudogene -1.8927 0.0000
63124 ENSG00000175305 CCNE2 cyclin E2 -1.8924 0.0000
63123 ENSG00000239182 NA -1.8923 0.0034
63122 ENSG00000177468 OLIG3 oligodendrocyte transcription factor 3 -1.8919 0.0000
63121 ENSG00000213225 NOC2LP1 NOC2 like nucleolar associated transcriptional repressor pseudogene 1 -1.8909 0.0000
63120 ENSG00000233708 epidermodysplasia verruciformis 1 (EVER1) pseudogene -1.8908 0.0000
63119 ENSG00000229344 MTCO2P12 MT-CO2 pseudogene 12 -1.8907 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...