SHOGoiN Cell Methylome: GSM2773600

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773600


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M227Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259941 novel transcript 2.3219 0.0003
2 ENSG00000235833 coiled-coil domain containing 144C (CCDC144C) pseudogene 2.0763 0.0000
3 ENSG00000196403 OR10D1P olfactory receptor family 10 subfamily D member 1 pseudogene 2.0000 0.0023
4 ENSG00000242072 novel transcript 2.0000 0.0023
5 ENSG00000198406 BZW1P2 basic leucine zipper and W2 domains 1 pseudogene 2 1.7925 0.0000
6 ENSG00000183631 PRR32 proline rich 32 1.5850 0.0177
7 ENSG00000225912 ribosomal protein L26 (RPL26) pseudogene 1.5850 0.0177
8 ENSG00000227785 leukemia NUP98 fusion partner 1 (LNP1) pseudogene 1.5850 0.0177
10 ENSG00000235511 OFD1P18Y OFD1 pseudogene 18 Y-linked 1.5850 0.0177
63332 ENSG00000280417 TEC -1.9463 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000264343 NOTCH2NLA notch 2 N-terminal like A -1.9491 0.0000
63340 ENSG00000259410 novel transcript -1.9488 0.0000
63339 ENSG00000206262 FOXL2NB FOXL2 neighbor -1.9484 0.0000
63338 ENSG00000165879 FRAT1 FRAT regulator of WNT signaling pathway 1 -1.9483 0.0000
63337 ENSG00000102871 TRADD TNFRSF1A associated via death domain -1.9479 0.0000
63336 ENSG00000185347 TEDC1 tubulin epsilon and delta complex 1 -1.9475 0.0000
63335 ENSG00000247735 novel transcript, antisense to KCTD13 -1.9474 0.0000
63334 ENSG00000261678 SCRT1 scratch family transcriptional repressor 1 -1.9469 0.0000
63333 ENSG00000221829 FANCG FA complementation group G -1.9465 0.0000
63332 ENSG00000280417 TEC -1.9463 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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