Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773600

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773600 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M227	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000259941		novel transcript	2.3219	0.0003
2	ENSG00000235833		coiled-coil domain containing 144C (CCDC144C) pseudogene	2.0763	0.0000
3	ENSG00000196403	OR10D1P	olfactory receptor family 10 subfamily D member 1 pseudogene	2.0000	0.0023
4	ENSG00000242072		novel transcript	2.0000	0.0023
5	ENSG00000198406	BZW1P2	basic leucine zipper and W2 domains 1 pseudogene 2	1.7925	0.0000
6	ENSG00000183631	PRR32	proline rich 32	1.5850	0.0177
7	ENSG00000225912	RPL26P36	ribosomal protein L26 pseudogene 36	1.5850	0.0177
8	ENSG00000227785		leukemia NUP98 fusion partner 1 (LNP1) pseudogene	1.5850	0.0177
10	ENSG00000235511	OFD1P18Y	OFD1 pseudogene 18 Y-linked	1.5850	0.0177
63119	ENSG00000229344	MTCO2P12	MT-CO2 pseudogene 12	-1.8907	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000102109	PCSK1N	proprotein convertase subtilisin/kexin type 1 inhibitor	-1.8932	0.0000
63127	ENSG00000164088	PPM1M	protein phosphatase, Mg2+/Mn2+ dependent 1M	-1.8929	0.0000
63126	ENSG00000179044	EXOC3L1	exocyst complex component 3 like 1	-1.8928	0.0000
63125	ENSG00000235390		high mobility group nucleosomal binding domain 2 (HMGN2) pseudogene	-1.8927	0.0000
63124	ENSG00000175305	CCNE2	cyclin E2	-1.8924	0.0000
63123	ENSG00000239182		NA	-1.8923	0.0034
63122	ENSG00000177468	OLIG3	oligodendrocyte transcription factor 3	-1.8919	0.0000
63121	ENSG00000213225	NOC2LP1	NOC2 like nucleolar associated transcriptional repressor pseudogene 1	-1.8909	0.0000
63120	ENSG00000233708		epidermodysplasia verruciformis 1 (EVER1) pseudogene	-1.8908	0.0000
63119	ENSG00000229344	MTCO2P12	MT-CO2 pseudogene 12	-1.8907	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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