SHOGoiN Cell Methylome: GSM2773600
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773600 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M227 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000259941 | novel transcript | 2.3219 | 0.0003 | |
| 2 | ENSG00000235833 | coiled-coil domain containing 144C (CCDC144C) pseudogene | 2.0763 | 0.0000 | |
| 3 | ENSG00000196403 | OR10D1P | olfactory receptor family 10 subfamily D member 1 pseudogene | 2.0000 | 0.0023 |
| 4 | ENSG00000242072 | novel transcript | 2.0000 | 0.0023 | |
| 5 | ENSG00000198406 | BZW1P2 | basic leucine zipper and W2 domains 1 pseudogene 2 | 1.7925 | 0.0000 |
| 6 | ENSG00000183631 | PRR32 | proline rich 32 | 1.5850 | 0.0177 |
| 7 | ENSG00000225912 | ribosomal protein L26 (RPL26) pseudogene | 1.5850 | 0.0177 | |
| 8 | ENSG00000227785 | leukemia NUP98 fusion partner 1 (LNP1) pseudogene | 1.5850 | 0.0177 | |
| 10 | ENSG00000235511 | OFD1P18Y | OFD1 pseudogene 18 Y-linked | 1.5850 | 0.0177 |
| 63332 | ENSG00000280417 | TEC | -1.9463 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000264343 | NOTCH2NLA | notch 2 N-terminal like A | -1.9491 | 0.0000 |
| 63340 | ENSG00000259410 | novel transcript | -1.9488 | 0.0000 | |
| 63339 | ENSG00000206262 | FOXL2NB | FOXL2 neighbor | -1.9484 | 0.0000 |
| 63338 | ENSG00000165879 | FRAT1 | FRAT regulator of WNT signaling pathway 1 | -1.9483 | 0.0000 |
| 63337 | ENSG00000102871 | TRADD | TNFRSF1A associated via death domain | -1.9479 | 0.0000 |
| 63336 | ENSG00000185347 | TEDC1 | tubulin epsilon and delta complex 1 | -1.9475 | 0.0000 |
| 63335 | ENSG00000247735 | novel transcript, antisense to KCTD13 | -1.9474 | 0.0000 | |
| 63334 | ENSG00000261678 | SCRT1 | scratch family transcriptional repressor 1 | -1.9469 | 0.0000 |
| 63333 | ENSG00000221829 | FANCG | FA complementation group G | -1.9465 | 0.0000 |
| 63332 | ENSG00000280417 | TEC | -1.9463 | 0.0000 |
