Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773601

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773601


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M228Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000176774 MAGEB18 MAGE family member B18 2.0000 0.0000
2 ENSG00000228777 LINC02534 long intergenic non-protein coding RNA 2534 1.5850 0.0234
3 ENSG00000251510 novel transcript 1.5850 0.0234
4 ENSG00000252209 RNU1-48P RNA, U1 small nuclear 48, pseudogene 1.5850 0.0234
5 ENSG00000279401 TEC 1.5850 0.0234
6 ENSG00000212027 MIR374B microRNA 374b 1.4838 0.0000
7 ENSG00000216938 RPL7P58 ribosomal protein L7 pseudogene 58 1.3900 0.0001
8 ENSG00000265102 MIR3942 microRNA 3942 1.3900 0.0001
9 ENSG00000283534 MIR374C microRNA 374c 1.3691 0.0000
10 ENSG00000199535 RNA5SP305 RNA, 5S ribosomal pseudogene 305 1.2925 0.0036

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000255182 novel transcript, antisense to PPP1R16A -1.7633 0.0000
63127 ENSG00000227920 novel transcript -1.7631 0.0000
63126 ENSG00000128917 DLL4 delta like canonical Notch ligand 4 -1.7628 0.0000
63125 ENSG00000133318 RTN3 reticulon 3 -1.7627 0.0000
63124 ENSG00000224272 novel transcript -1.7624 0.0000
63123 ENSG00000232640 novel transcript -1.7623 0.0000
63122 ENSG00000142507 PSMB6 proteasome 20S subunit beta 6 -1.7621 0.0000
63121 ENSG00000256263 DDX11L8 DEAD/H-box helicase 11 like 8 (pseudogene) -1.7619 0.0000
63120 ENSG00000278017 novel transcript, antisense to ZCCHC2 -1.7616 0.0000
63119 ENSG00000259475 novel transcript, antisense to IGF1R and SYNM -1.7616 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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