SHOGoiN Cell Methylome: GSM2773601

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773601


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M228Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000176774 MAGEB18 MAGE family member B18 2.0000 0.0000
2 ENSG00000228777 LINC02534 long intergenic non-protein coding RNA 2534 1.5850 0.0234
3 ENSG00000251510 novel transcript 1.5850 0.0234
4 ENSG00000252209 RNU1-48P RNA, U1 small nuclear 48, pseudogene 1.5850 0.0234
5 ENSG00000279401 TEC 1.5850 0.0234
6 ENSG00000212027 MIR374B microRNA 374b 1.4838 0.0000
7 ENSG00000216938 RPL7P58 ribosomal protein L7 pseudogene 58 1.3900 0.0001
8 ENSG00000265102 MIR3942 microRNA 3942 1.3900 0.0001
9 ENSG00000283534 MIR374C microRNA 374c 1.3691 0.0000
10 ENSG00000199535 RNA5SP305 RNA, 5S ribosomal pseudogene 305 1.2925 0.0036

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000259330 INAFM2 InaF motif containing 2 -1.8146 0.0000
63340 ENSG00000177340 novel transcript, antisense to FAM60A -1.8146 0.0000
63339 ENSG00000185090 MANEAL mannosidase endo-alpha like -1.8145 0.0000
63338 ENSG00000171522 PTGER4 prostaglandin E receptor 4 -1.8144 0.0000
63337 ENSG00000185519 FAM131C family with sequence similarity 131 member C -1.8142 0.0000
63336 ENSG00000205097 FRG2 FSHD region gene 2 -1.8140 0.0000
63335 ENSG00000259066 novel protein -1.8138 0.0000
63334 ENSG00000186715 MST1L macrophage stimulating 1 like -1.8137 0.0000
63333 ENSG00000260293 novel transcript, intronic to TBC1D24 -1.8136 0.0000
63332 ENSG00000201852 RNU6-702P RNA, U6 small nuclear 702, pseudogene -1.8131 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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