SHOGoiN Cell Methylome: GSM2773602
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773602 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M229 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000264104 | SECIS binding protein 2 (SECISBP2) pseudogene | 2.8074 | 0.0000 | |
| 2 | ENSG00000231675 | nuclear receptor coactivator 6 (NCOA6) pseudogene | 2.7518 | 0.0000 | |
| 3 | ENSG00000256238 | SUPT16HP1 | SPT16 homolog, facilitates chromatin remodeling subunit pseudogene 1 | 2.5850 | 0.0001 |
| 4 | ENSG00000201104 | RNU6-11P | RNA, U6 small nuclear 11, pseudogene | 2.4096 | 0.0000 |
| 5 | ENSG00000169550 | MUC15 | mucin 15, cell surface associated | 2.3219 | 0.0000 |
| 6 | ENSG00000186886 | OR5D3P | olfactory receptor family 5 subfamily D member 3 pseudogene | 2.3219 | 0.0008 |
| 7 | ENSG00000212293 | NA | 2.3219 | 0.0008 | |
| 8 | ENSG00000224517 | HTR2A-AS1 | HTR2A antisense RNA 1 | 2.3219 | 0.0008 |
| 9 | ENSG00000233907 | LINC01761 | long intergenic non-protein coding RNA 1761 | 2.3219 | 0.0008 |
| 10 | ENSG00000234878 | HSPE1P1 | heat shock protein family E (Hsp10) member 1 pseudogene 1 | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000204435 | CSNK2B | casein kinase 2 beta | -1.6418 | 0.0000 |
| 63340 | ENSG00000256747 | novel transcript | -1.6415 | 0.0000 | |
| 63339 | ENSG00000283403 | novel transcript | -1.6411 | 0.0000 | |
| 63338 | ENSG00000277895 | novel transcript, antisense to TBK1 | -1.6407 | 0.0000 | |
| 63337 | ENSG00000273492 | novel transcript | -1.6407 | 0.0000 | |
| 63336 | ENSG00000164976 | MYORG | myogenesis regulating glycosidase (putative) | -1.6396 | 0.0000 |
| 63335 | ENSG00000184203 | PPP1R2 | protein phosphatase 1 regulatory inhibitor subunit 2 | -1.6387 | 0.0000 |
| 63334 | ENSG00000258858 | novel transcript, antisense to INF2 | -1.6376 | 0.0000 | |
| 63333 | ENSG00000207511 | RNU6-771P | RNA, U6 small nuclear 771, pseudogene | -1.6375 | 0.0063 |
| 63332 | ENSG00000204791 | SMPD5 | sphingomyelin phosphodiesterase 5 | -1.6366 | 0.0000 |
