SHOGoiN Cell Methylome: GSM2773602

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773602


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M229Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000264104 SECIS binding protein 2 (SECISBP2) pseudogene 2.8074 0.0000
2 ENSG00000231675 nuclear receptor coactivator 6 (NCOA6) pseudogene 2.7518 0.0000
3 ENSG00000256238 SUPT16HP1 SPT16 homolog, facilitates chromatin remodeling subunit pseudogene 1 2.5850 0.0001
4 ENSG00000201104 RNU6-11P RNA, U6 small nuclear 11, pseudogene 2.4096 0.0000
5 ENSG00000169550 MUC15 mucin 15, cell surface associated 2.3219 0.0000
6 ENSG00000186886 OR5D3P olfactory receptor family 5 subfamily D member 3 pseudogene 2.3219 0.0008
7 ENSG00000212293 NA 2.3219 0.0008
8 ENSG00000224517 HTR2A-AS1 HTR2A antisense RNA 1 2.3219 0.0008
9 ENSG00000233907 LINC01761 long intergenic non-protein coding RNA 1761 2.3219 0.0008
10 ENSG00000234878 HSPE1P1 heat shock protein family E (Hsp10) member 1 pseudogene 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000204435 CSNK2B casein kinase 2 beta -1.6418 0.0000
63340 ENSG00000256747 novel transcript -1.6415 0.0000
63339 ENSG00000283403 novel transcript -1.6411 0.0000
63338 ENSG00000277895 novel transcript, antisense to TBK1 -1.6407 0.0000
63337 ENSG00000273492 novel transcript -1.6407 0.0000
63336 ENSG00000164976 MYORG myogenesis regulating glycosidase (putative) -1.6396 0.0000
63335 ENSG00000184203 PPP1R2 protein phosphatase 1 regulatory inhibitor subunit 2 -1.6387 0.0000
63334 ENSG00000258858 novel transcript, antisense to INF2 -1.6376 0.0000
63333 ENSG00000207511 RNU6-771P RNA, U6 small nuclear 771, pseudogene -1.6375 0.0063
63332 ENSG00000204791 SMPD5 sphingomyelin phosphodiesterase 5 -1.6366 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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