Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773602

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773602


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M229Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000264104 SECIS binding protein 2 (SECISBP2) pseudogene 2.8074 0.0000
2 ENSG00000231675 nuclear receptor coactivator 6 (NCOA6) pseudogene 2.7518 0.0000
3 ENSG00000256238 SUPT16HP1 SPT16 homolog, facilitates chromatin remodeling subunit pseudogene 1 2.5850 0.0001
4 ENSG00000201104 RNU6-11P RNA, U6 small nuclear 11, pseudogene 2.4096 0.0000
5 ENSG00000169550 MUC15 mucin 15, cell surface associated 2.3219 0.0000
6 ENSG00000186886 OR5D3P olfactory receptor family 5 subfamily D member 3 pseudogene 2.3219 0.0008
7 ENSG00000212293 NA 2.3219 0.0008
8 ENSG00000224517 HTR2A-AS1 HTR2A antisense RNA 1 2.3219 0.0008
9 ENSG00000233907 LINC01761 long intergenic non-protein coding RNA 1761 2.3219 0.0008
10 ENSG00000234878 HSPE1P1 heat shock protein family E (Hsp10) member 1 pseudogene 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000274297 novel transcript, sense intronic to UACA -1.5850 1.0000
63127 ENSG00000274049 INO80B-WBP1 INO80B-WBP1 readthrough (NMD candidate) -1.5850 1.0000
63126 ENSG00000273818 RN7SL673P RNA, 7SL, cytoplasmic 673, pseudogene -1.5850 0.5981
63125 ENSG00000273727 U1 spliceosomal RNA -1.5850 0.3867
63124 ENSG00000272937 OR6U2P olfactory receptor family 6 subfamily U member 2 pseudogene -1.5850 0.2376
63123 ENSG00000271981 novel transcript -1.5850 0.3867
63122 ENSG00000271627 NKAIN1P2 NKAIN1 pseudogene 2 -1.5850 1.0000
63121 ENSG00000271464 DPRXP7 divergent-paired related homeobox pseudogene 7 -1.5850 1.0000
63120 ENSG00000271351 IGKV1OR2-9 immunoglobulin kappa variable 1/OR2-9 (pseudogene) -1.5850 0.5981
63119 ENSG00000271257 prenyl (decaprenyl) diphosphate synthase, subunit 2 (PDSS2) pseudogene -1.5850 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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