Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773602

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773602 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M229	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000264104		SECIS binding protein 2 (SECISBP2) pseudogene	2.8074	0.0000
2	ENSG00000231675		nuclear receptor coactivator 6 (NCOA6) pseudogene	2.7518	0.0000
3	ENSG00000256238	SUPT16HP1	SPT16 homolog, facilitates chromatin remodeling subunit pseudogene 1	2.5850	0.0001
4	ENSG00000201104	RNU6-11P	RNA, U6 small nuclear 11, pseudogene	2.4096	0.0000
5	ENSG00000169550	MUC15	mucin 15, cell surface associated	2.3219	0.0000
6	ENSG00000186886	OR5D3P	olfactory receptor family 5 subfamily D member 3 pseudogene	2.3219	0.0008
7	ENSG00000212293		NA	2.3219	0.0008
8	ENSG00000224517	HTR2A-AS1	HTR2A antisense RNA 1	2.3219	0.0008
9	ENSG00000233907	LINC01761	long intergenic non-protein coding RNA 1761	2.3219	0.0008
10	ENSG00000234878	HSPE1P1	heat shock protein family E (Hsp10) member 1 pseudogene 1	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000274297		novel transcript, sense intronic to UACA	-1.5850	1.0000
63127	ENSG00000274049	INO80B-WBP1	INO80B-WBP1 readthrough (NMD candidate)	-1.5850	1.0000
63126	ENSG00000273818	RN7SL673P	RNA, 7SL, cytoplasmic 673, pseudogene	-1.5850	0.5981
63125	ENSG00000273727		U1 spliceosomal RNA	-1.5850	0.3867
63124	ENSG00000272937	OR6U2P	olfactory receptor family 6 subfamily U member 2 pseudogene	-1.5850	0.2376
63123	ENSG00000271981		novel transcript	-1.5850	0.3867
63122	ENSG00000271627	NKAIN1P2	NKAIN1 pseudogene 2	-1.5850	1.0000
63121	ENSG00000271464	DPRXP7	divergent-paired related homeobox pseudogene 7	-1.5850	1.0000
63120	ENSG00000271351	IGKV1OR2-9	immunoglobulin kappa variable 1/OR2-9 (pseudogene)	-1.5850	0.5981
63119	ENSG00000271257		prenyl (decaprenyl) diphosphate synthase, subunit 2 (PDSS2) pseudogene	-1.5850	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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