Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773602
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773602
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M229
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000264104
SECIS binding protein 2 (SECISBP2) pseudogene
2.8074
0.0000
2
ENSG00000231675
nuclear receptor coactivator 6 (NCOA6) pseudogene
2.7518
0.0000
3
ENSG00000256238
SUPT16HP1
SPT16 homolog, facilitates chromatin remodeling subunit pseudogene 1
2.5850
0.0001
4
ENSG00000201104
RNU6-11P
RNA, U6 small nuclear 11, pseudogene
2.4096
0.0000
5
ENSG00000169550
MUC15
mucin 15, cell surface associated
2.3219
0.0000
6
ENSG00000186886
OR5D3P
olfactory receptor family 5 subfamily D member 3 pseudogene
2.3219
0.0008
7
ENSG00000212293
NA
2.3219
0.0008
8
ENSG00000224517
HTR2A-AS1
HTR2A antisense RNA 1
2.3219
0.0008
9
ENSG00000233907
LINC01761
long intergenic non-protein coding RNA 1761
2.3219
0.0008
10
ENSG00000234878
HSPE1P1
heat shock protein family E (Hsp10) member 1 pseudogene 1
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000274297
novel transcript, sense intronic to UACA
-1.5850
1.0000
63127
ENSG00000274049
INO80B-WBP1
INO80B-WBP1 readthrough (NMD candidate)
-1.5850
1.0000
63126
ENSG00000273818
RN7SL673P
RNA, 7SL, cytoplasmic 673, pseudogene
-1.5850
0.5981
63125
ENSG00000273727
U1 spliceosomal RNA
-1.5850
0.3867
63124
ENSG00000272937
OR6U2P
olfactory receptor family 6 subfamily U member 2 pseudogene
-1.5850
0.2376
63123
ENSG00000271981
novel transcript
-1.5850
0.3867
63122
ENSG00000271627
NKAIN1P2
NKAIN1 pseudogene 2
-1.5850
1.0000
63121
ENSG00000271464
DPRXP7
divergent-paired related homeobox pseudogene 7
-1.5850
1.0000
63120
ENSG00000271351
IGKV1OR2-9
immunoglobulin kappa variable 1/OR2-9 (pseudogene)
-1.5850
0.5981
63119
ENSG00000271257
prenyl (decaprenyl) diphosphate synthase, subunit 2 (PDSS2) pseudogene
-1.5850
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
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Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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