Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773603

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773603


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M230Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000269136 BRI3BPP1 BRI3 binding protein pseudogene 1 2.8074 0.0000
3 ENSG00000284500 novel transcript 2.6962 0.0000
4 ENSG00000206770 Y RNA 2.5850 0.0001
5 ENSG00000248692 ADGRL3-AS1 ADGRL3 antisense RNA 1 2.5850 0.0001
6 ENSG00000253317 novel transcript 2.5850 0.0001
7 ENSG00000276467 zinc finger protein 831 (ZNF831) pseudogene 2.5850 0.0001
8 ENSG00000279059 TEC 2.5646 0.0000
9 ENSG00000112685 EXOC2 exocyst complex component 2 2.4459 0.0000
10 ENSG00000133115 STOML3 stomatin like 3 2.3219 0.0007
63119 ENSG00000212610 Small nucleolar RNA U3 -1.8248 0.0153

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000170035 UBE2E3 ubiquitin conjugating enzyme E2 E3 -1.8286 0.0000
63127 ENSG00000252783 RNU6-835P RNA, U6 small nuclear 835, pseudogene -1.8286 0.0000
63126 ENSG00000204031 LCN1P2 lipocalin 1 pseudogene 2 -1.8284 0.0000
63125 ENSG00000243720 RPL21P127 ribosomal protein L21 pseudogene 127 -1.8281 0.0017
63124 ENSG00000277129 NA -1.8277 0.0000
63123 ENSG00000204152 TIMM23B translocase of inner mitochondrial membrane 23 homolog B -1.8263 0.0000
63122 ENSG00000102048 ASB9 ankyrin repeat and SOCS box containing 9 -1.8261 0.0000
63121 ENSG00000142507 PSMB6 proteasome 20S subunit beta 6 -1.8258 0.0000
63120 ENSG00000125691 RPL23 ribosomal protein L23 -1.8257 0.0000
63119 ENSG00000212610 Small nucleolar RNA U3 -1.8248 0.0153

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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