SHOGoiN Cell Methylome: GSM2773603

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773603


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M230Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000269136 BRI3BPP1 BRI3 binding protein pseudogene 1 2.8074 0.0000
3 ENSG00000284500 novel transcript 2.6962 0.0000
4 ENSG00000206770 NA 2.5850 0.0001
5 ENSG00000248692 ADGRL3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 2.5850 0.0001
6 ENSG00000253317 novel transcript 2.5850 0.0001
7 ENSG00000276467 zinc finger protein 831 (ZNF831) pseudogene 2.5850 0.0001
8 ENSG00000279059 TEC 2.5646 0.0000
9 ENSG00000112685 EXOC2 exocyst complex component 2 2.4459 0.0000
10 ENSG00000133115 STOML3 stomatin like 3 2.3219 0.0007
63332 ENSG00000239255 pseudogene similar to part of guanine nucleotide binding protein (G protein), beta polypeptide 1GNB1 -1.9159 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000274220 novel transcript -1.9199 0.0000
63340 ENSG00000283133 mitochondrially encoded NADH dehydrogenase 4 (MT-ND4) pseudogene -1.9187 0.0000
63339 ENSG00000228596 novel transcript -1.9185 0.0000
63338 ENSG00000231100 amyloid P component, serum (APCS) pseudogene -1.9183 0.3713
63337 ENSG00000258883 neurobeachin (NBEA) pseudogene -1.9170 0.1464
63336 ENSG00000255561 FDXACB1 ferredoxin-fold anticodon binding domain containing 1 -1.9170 0.0099
63335 ENSG00000137720 C11orf1 chromosome 11 open reading frame 1 -1.9170 0.0099
63334 ENSG00000051108 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 -1.9166 0.0000
63333 ENSG00000205669 ACOT6 acyl-CoA thioesterase 6 -1.9165 0.0000
63332 ENSG00000239255 pseudogene similar to part of guanine nucleotide binding protein (G protein), beta polypeptide 1GNB1 -1.9159 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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