SHOGoiN Cell Methylome: GSM2773604
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773604 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M231 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000241965 | RPS2P25 | ribosomal protein S2 pseudogene 25 | 4.4624 | 0.0000 |
| 2 | ENSG00000265712 | intraflagellar transport 57 homolog (Chlamydomonas) (IFT57) pseudogene | 2.8774 | 0.0000 | |
| 3 | ENSG00000198829 | SUCNR1 | succinate receptor 1 | 2.8074 | 0.0000 |
| 4 | ENSG00000223915 | DPPA2P1 | developmental pluripotency associated 2 pseudogene 1 | 2.8074 | 0.0000 |
| 5 | ENSG00000248766 | novel pseudogene | 2.8074 | 0.0000 | |
| 6 | ENSG00000162630 | B3GALT2 | beta-1,3-galactosyltransferase 2 | 2.5850 | 0.0000 |
| 7 | ENSG00000260244 | novel transcript, overlapping GUCY1A3 | 2.5850 | 0.0001 | |
| 8 | ENSG00000249239 | Guanine nucleotide-binding protein subunit beta-2-like 1 (GNB2L1) pseudogene | 2.4387 | 0.0000 | |
| 9 | ENSG00000248848 | PPBPP2 | pro-platelet basic protein pseudogene 2 | 2.4320 | 0.0000 |
| 10 | ENSG00000251787 | RNU7-47P | RNA, U7 small nuclear 47 pseudogene | 2.3258 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000282907 | novel transcript | -2.4439 | 0.0000 | |
| 63340 | ENSG00000182575 | NXPH3 | neurexophilin 3 | -2.4437 | 0.0000 |
| 63339 | ENSG00000280369 | tec | -2.4436 | 0.0000 | |
| 63338 | ENSG00000100485 | SOS2 | SOS Ras/Rho guanine nucleotide exchange factor 2 | -2.4430 | 0.0000 |
| 63337 | ENSG00000270828 | novel transcript | -2.4425 | 0.0000 | |
| 63336 | ENSG00000276436 | novel transcript, antisense to KPNA3 | -2.4413 | 0.0000 | |
| 63335 | ENSG00000265801 | novel transcript | -2.4405 | 0.0000 | |
| 63334 | ENSG00000185608 | MRPL40 | mitochondrial ribosomal protein L40 | -2.4402 | 0.0000 |
| 63333 | ENSG00000278934 | TEC | -2.4398 | 0.0000 | |
| 63332 | ENSG00000174871 | CNIH2 | cornichon family AMPA receptor auxiliary protein 2 | -2.4396 | 0.0000 |
