Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773604

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773604


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M231Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000241965 RPS2P25 ribosomal protein S2 pseudogene 25 4.4624 0.0000
2 ENSG00000265712 intraflagellar transport 57 homolog (Chlamydomonas) (IFT57) pseudogene 2.8774 0.0000
3 ENSG00000198829 SUCNR1 succinate receptor 1 2.8074 0.0000
4 ENSG00000223915 DPPA2P1 developmental pluripotency associated 2 pseudogene 1 2.8074 0.0000
5 ENSG00000248766 novel pseudogene 2.8074 0.0000
6 ENSG00000162630 B3GALT2 beta-1,3-galactosyltransferase 2 2.5850 0.0000
7 ENSG00000260244 novel transcript, overlapping GUCY1A3 2.5850 0.0001
8 ENSG00000249239 Guanine nucleotide-binding protein subunit beta-2-like 1 (GNB2L1) pseudogene 2.4387 0.0000
9 ENSG00000248848 PPBPP2 pro-platelet basic protein pseudogene 2 2.4320 0.0000
10 ENSG00000251787 RNU7-47P RNA, U7 small nuclear 47 pseudogene 2.3258 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000135446 CDK4 cyclin dependent kinase 4 -2.3774 0.0000
63127 ENSG00000238649 SNORD42A small nucleolar RNA, C/D box 42A -2.3774 0.0000
63126 ENSG00000224825 RORB-AS1 RORB antisense RNA 1 -2.3774 0.0000
63125 ENSG00000233246 PHC2-AS1 PHC2 antisense RNA 1 -2.3770 0.0000
63124 ENSG00000224816 NAP1L4P2 nucleosome assembly protein 1 like 4 pseudogene 2 -2.3768 0.0651
63123 ENSG00000225006 novel transcript -2.3765 0.0236
63122 ENSG00000264290 novel transcript -2.3764 0.0000
63121 ENSG00000277469 NA -2.3764 0.0000
63120 ENSG00000164116 GUCY1A1 guanylate cyclase 1 soluble subunit alpha 1 -2.3763 0.0000
63119 ENSG00000196428 TSC22D2 TSC22 domain family member 2 -2.3761 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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