Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773604

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773604 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M231	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000241965	RPS2P25	ribosomal protein S2 pseudogene 25	4.4624	0.0000
2	ENSG00000265712		intraflagellar transport 57 homolog (Chlamydomonas) (IFT57) pseudogene	2.8774	0.0000
3	ENSG00000198829	SUCNR1	succinate receptor 1	2.8074	0.0000
4	ENSG00000223915	DPPA2P1	developmental pluripotency associated 2 pseudogene 1	2.8074	0.0000
5	ENSG00000248766		novel pseudogene	2.8074	0.0000
6	ENSG00000162630	B3GALT2	beta-1,3-galactosyltransferase 2	2.5850	0.0000
7	ENSG00000260244		novel transcript, overlapping GUCY1A3	2.5850	0.0001
8	ENSG00000249239		Guanine nucleotide-binding protein subunit beta-2-like 1 (GNB2L1) pseudogene	2.4387	0.0000
9	ENSG00000248848	PPBPP2	pro-platelet basic protein pseudogene 2	2.4320	0.0000
10	ENSG00000251787	RNU7-47P	RNA, U7 small nuclear 47 pseudogene	2.3258	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000135446	CDK4	cyclin dependent kinase 4	-2.3774	0.0000
63127	ENSG00000238649	SNORD42A	small nucleolar RNA, C/D box 42A	-2.3774	0.0000
63126	ENSG00000224825	RORB-AS1	RORB antisense RNA 1	-2.3774	0.0000
63125	ENSG00000233246	PHC2-AS1	PHC2 antisense RNA 1	-2.3770	0.0000
63124	ENSG00000224816	NAP1L4P2	nucleosome assembly protein 1 like 4 pseudogene 2	-2.3768	0.0651
63123	ENSG00000225006		novel transcript	-2.3765	0.0236
63122	ENSG00000264290		novel transcript	-2.3764	0.0000
63121	ENSG00000277469		NA	-2.3764	0.0000
63120	ENSG00000164116	GUCY1A1	guanylate cyclase 1 soluble subunit alpha 1	-2.3763	0.0000
63119	ENSG00000196428	TSC22D2	TSC22 domain family member 2	-2.3761	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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