Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773604
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773604
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M231
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000241965
RPS2P25
ribosomal protein S2 pseudogene 25
4.4624
0.0000
2
ENSG00000265712
intraflagellar transport 57 homolog (Chlamydomonas) (IFT57) pseudogene
2.8774
0.0000
3
ENSG00000198829
SUCNR1
succinate receptor 1
2.8074
0.0000
4
ENSG00000223915
DPPA2P1
developmental pluripotency associated 2 pseudogene 1
2.8074
0.0000
5
ENSG00000248766
novel pseudogene
2.8074
0.0000
6
ENSG00000162630
B3GALT2
beta-1,3-galactosyltransferase 2
2.5850
0.0000
7
ENSG00000260244
novel transcript, overlapping GUCY1A3
2.5850
0.0001
8
ENSG00000249239
Guanine nucleotide-binding protein subunit beta-2-like 1 (GNB2L1) pseudogene
2.4387
0.0000
9
ENSG00000248848
PPBPP2
pro-platelet basic protein pseudogene 2
2.4320
0.0000
10
ENSG00000251787
RNU7-47P
RNA, U7 small nuclear 47 pseudogene
2.3258
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000135446
CDK4
cyclin dependent kinase 4
-2.3774
0.0000
63127
ENSG00000238649
SNORD42A
small nucleolar RNA, C/D box 42A
-2.3774
0.0000
63126
ENSG00000224825
RORB-AS1
RORB antisense RNA 1
-2.3774
0.0000
63125
ENSG00000233246
PHC2-AS1
PHC2 antisense RNA 1
-2.3770
0.0000
63124
ENSG00000224816
NAP1L4P2
nucleosome assembly protein 1 like 4 pseudogene 2
-2.3768
0.0651
63123
ENSG00000225006
novel transcript
-2.3765
0.0236
63122
ENSG00000264290
novel transcript
-2.3764
0.0000
63121
ENSG00000277469
NA
-2.3764
0.0000
63120
ENSG00000164116
GUCY1A1
guanylate cyclase 1 soluble subunit alpha 1
-2.3763
0.0000
63119
ENSG00000196428
TSC22D2
TSC22 domain family member 2
-2.3761
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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