SHOGoiN Cell Methylome: GSM2773604

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773604


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M231Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000241965 RPS2P25 ribosomal protein S2 pseudogene 25 4.4624 0.0000
2 ENSG00000265712 intraflagellar transport 57 homolog (Chlamydomonas) (IFT57) pseudogene 2.8774 0.0000
3 ENSG00000198829 SUCNR1 succinate receptor 1 2.8074 0.0000
4 ENSG00000223915 DPPA2P1 developmental pluripotency associated 2 pseudogene 1 2.8074 0.0000
5 ENSG00000248766 novel pseudogene 2.8074 0.0000
6 ENSG00000162630 B3GALT2 beta-1,3-galactosyltransferase 2 2.5850 0.0000
7 ENSG00000260244 novel transcript, overlapping GUCY1A3 2.5850 0.0001
8 ENSG00000249239 Guanine nucleotide-binding protein subunit beta-2-like 1 (GNB2L1) pseudogene 2.4387 0.0000
9 ENSG00000248848 PPBPP2 pro-platelet basic protein pseudogene 2 2.4320 0.0000
10 ENSG00000251787 RNU7-47P RNA, U7 small nuclear 47 pseudogene 2.3258 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000282907 novel transcript -2.4439 0.0000
63340 ENSG00000182575 NXPH3 neurexophilin 3 -2.4437 0.0000
63339 ENSG00000280369 tec -2.4436 0.0000
63338 ENSG00000100485 SOS2 SOS Ras/Rho guanine nucleotide exchange factor 2 -2.4430 0.0000
63337 ENSG00000270828 novel transcript -2.4425 0.0000
63336 ENSG00000276436 novel transcript, antisense to KPNA3 -2.4413 0.0000
63335 ENSG00000265801 novel transcript -2.4405 0.0000
63334 ENSG00000185608 MRPL40 mitochondrial ribosomal protein L40 -2.4402 0.0000
63333 ENSG00000278934 TEC -2.4398 0.0000
63332 ENSG00000174871 CNIH2 cornichon family AMPA receptor auxiliary protein 2 -2.4396 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...