SHOGoiN Cell Methylome: GSM2773605

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773605


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M232Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000187657 TSPY13P testis specific protein Y-linked 13, pseudogene 3.3219 0.0000
2 ENSG00000243055 GK-AS1 GK antisense RNA 1 2.7359 0.0000
3 ENSG00000270619 bromodomain adjacent to zinc finger domain, 2A (BAZ2A) pseudogene 2.6038 0.0000
4 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 2.5850 0.0000
5 ENSG00000226611 OFD1P2Y OFD1 pseudogene 2 Y-linked 2.5850 0.0000
6 ENSG00000271322 scavenger receptor class B, member 1 (SCARB1) pseudogene 2.5646 0.0000
7 ENSG00000222240 RN7SKP156 RN7SK pseudogene 156 2.3219 0.0003
8 ENSG00000228020 HNRNPA1P46 heterogeneous nuclear ribonucleoprotein A1 pseudogene 46 2.3219 0.0003
9 ENSG00000228303 C2H2 zinc finger protein pseudogene 2.3219 0.0000
10 ENSG00000278569 NA 2.2919 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000165392 WRN Werner syndrome RecQ like helicase -2.3351 0.0000
63340 ENSG00000260680 AGGF1P5 angiogenic factor with G-patch and FHA domains 1 pseudogene 5 -2.3348 0.0000
63339 ENSG00000258376 novel transcript, antisense to PAPLN -2.3345 0.0000
63338 ENSG00000270487 novel transcript, antisense to ARID1B -2.3332 0.0000
63337 ENSG00000261759 novel transcript, antisense to ITPRIPL2 -2.3313 0.0000
63336 ENSG00000174804 FZD4 frizzled class receptor 4 -2.3313 0.0000
63335 ENSG00000164031 DNAJB14 DnaJ heat shock protein family (Hsp40) member B14 -2.3309 0.0000
63334 ENSG00000267264 vomeronasal receptor pseudogene -2.3307 0.0000
63333 ENSG00000267420 novel transcript -2.3302 0.0000
63332 ENSG00000175582 RAB6A RAB6A, member RAS oncogene family -2.3302 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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