Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773605

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773605


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M232Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000187657 TSPY13P testis specific protein Y-linked 13, pseudogene 3.3219 0.0000
2 ENSG00000243055 GK-AS1 GK antisense RNA 1 2.7359 0.0000
3 ENSG00000270619 bromodomain adjacent to zinc finger domain, 2A (BAZ2A) pseudogene 2.6038 0.0000
4 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 2.5850 0.0000
5 ENSG00000226611 OFD1P2Y OFD1 pseudogene 2 Y-linked 2.5850 0.0000
6 ENSG00000271322 scavenger receptor class B, member 1 (SCARB1) pseudogene 2.5646 0.0000
7 ENSG00000222240 RN7SKP156 RN7SK pseudogene 156 2.3219 0.0003
8 ENSG00000228020 HNRNPA1P46 heterogeneous nuclear ribonucleoprotein A1 pseudogene 46 2.3219 0.0003
9 ENSG00000228303 C2H2 zinc finger protein pseudogene 2.3219 0.0000
10 ENSG00000278569 Metazoan signal recognition particle RNA 2.2919 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000227704 novel transcript -2.2805 0.0000
63127 ENSG00000101224 CDC25B cell division cycle 25B -2.2805 0.0000
63126 ENSG00000244280 ECEL1P2 endothelin converting enzyme like 1 pseudogene 2 -2.2798 0.0000
63125 ENSG00000274356 ral guanine nucleotide dissociation stimulator (RALGDS) pseudogene -2.2797 0.0000
63124 ENSG00000274874 novel protein -2.2794 0.0000
63123 ENSG00000243819 RN7SL832P RNA, 7SL, cytoplasmic 832, pseudogene -2.2790 0.0000
63122 ENSG00000178996 SNX18 sorting nexin 18 -2.2780 0.0000
63121 ENSG00000188229 TUBB4B tubulin beta 4B class IVb -2.2779 0.0000
63120 ENSG00000171823 FBXL14 F-box and leucine rich repeat protein 14 -2.2775 0.0000
63119 ENSG00000179388 EGR3 early growth response 3 -2.2771 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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