Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773606

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773606


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M233Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000225602 MTOR-AS1 MTOR antisense RNA 1 3.7004 0.0000
2 ENSG00000228590 MIR4432 host gene 3.7004 0.0000
3 ENSG00000239180 Y RNA 3.5850 0.0000
4 ENSG00000274421 novel transcript 3.5850 0.0000
5 ENSG00000281883 novel transcript 3.5850 0.0000
6 ENSG00000202398 RNU6-61P RNA, U6 small nuclear 61, pseudogene 3.5713 0.0000
7 ENSG00000204136 GGTA1 glycoprotein alpha-galactosyltransferase 1 (inactive) 3.4594 0.0000
8 ENSG00000206979 SNORD61 small nucleolar RNA, C/D box 61 3.4594 0.0000
9 ENSG00000260059 novel transcript 3.4594 0.0000
10 ENSG00000261402 novel transcript 3.4154 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000273706 LHX1 LIM homeobox 1 -2.8297 0.0000
63127 ENSG00000277171 novel zinc finger protein pseudogene -2.8295 0.0074
63126 ENSG00000224482 HSFY4P heat shock transcription factor Y-linked 4, pseudogene -2.8295 0.0175
63125 ENSG00000128917 DLL4 delta like canonical Notch ligand 4 -2.8292 0.0000
63124 ENSG00000259952 novel transcript, antisense to MAZ -2.8286 0.0000
63123 ENSG00000231914 LINC00387 long intergenic non-protein coding RNA 387 -2.8283 0.0000
63122 ENSG00000258345 novel transcript, antisense to ZC3H10 and ESYT1 -2.8280 0.0000
63121 ENSG00000234529 GAPDHP19 glyceraldehyde 3 phosphate dehydrogenase pseudogene 19 -2.8264 0.0050
63120 ENSG00000258731 novel transcript, antisense to DDHD1 -2.8261 0.0000
63119 ENSG00000166908 PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma -2.8255 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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