Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773606
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773606
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M233
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000225602
MTOR-AS1
MTOR antisense RNA 1
3.7004
0.0000
2
ENSG00000228590
MIR4432 host gene
3.7004
0.0000
3
ENSG00000239180
Y RNA
3.5850
0.0000
4
ENSG00000274421
novel transcript
3.5850
0.0000
5
ENSG00000281883
novel transcript
3.5850
0.0000
6
ENSG00000202398
RNU6-61P
RNA, U6 small nuclear 61, pseudogene
3.5713
0.0000
7
ENSG00000204136
GGTA1
glycoprotein alpha-galactosyltransferase 1 (inactive)
3.4594
0.0000
8
ENSG00000206979
SNORD61
small nucleolar RNA, C/D box 61
3.4594
0.0000
9
ENSG00000260059
novel transcript
3.4594
0.0000
10
ENSG00000261402
novel transcript
3.4154
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000273706
LHX1
LIM homeobox 1
-2.8297
0.0000
63127
ENSG00000277171
novel zinc finger protein pseudogene
-2.8295
0.0074
63126
ENSG00000224482
HSFY4P
heat shock transcription factor Y-linked 4, pseudogene
-2.8295
0.0175
63125
ENSG00000128917
DLL4
delta like canonical Notch ligand 4
-2.8292
0.0000
63124
ENSG00000259952
novel transcript, antisense to MAZ
-2.8286
0.0000
63123
ENSG00000231914
LINC00387
long intergenic non-protein coding RNA 387
-2.8283
0.0000
63122
ENSG00000258345
novel transcript, antisense to ZC3H10 and ESYT1
-2.8280
0.0000
63121
ENSG00000234529
GAPDHP19
glyceraldehyde 3 phosphate dehydrogenase pseudogene 19
-2.8264
0.0050
63120
ENSG00000258731
novel transcript, antisense to DDHD1
-2.8261
0.0000
63119
ENSG00000166908
PIP4K2C
phosphatidylinositol-5-phosphate 4-kinase type 2 gamma
-2.8255
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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