SHOGoiN Cell Methylome: GSM2773606
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773606 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M233 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000225602 | MTOR-AS1 | MTOR antisense RNA 1 | 3.7004 | 0.0000 |
| 2 | ENSG00000228590 | novel transcript | 3.7004 | 0.0000 | |
| 3 | ENSG00000239180 | NA | 3.5850 | 0.0000 | |
| 4 | ENSG00000274421 | novel transcript | 3.5850 | 0.0000 | |
| 5 | ENSG00000281883 | novel transcript | 3.5850 | 0.0000 | |
| 6 | ENSG00000202398 | RNU6-61P | RNA, U6 small nuclear 61, pseudogene | 3.5713 | 0.0000 |
| 7 | ENSG00000204136 | GGTA1P | glycoprotein alpha-galactosyltransferase 1, pseudogene | 3.4594 | 0.0000 |
| 8 | ENSG00000206979 | SNORD61 | small nucleolar RNA, C/D box 61 | 3.4594 | 0.0000 |
| 9 | ENSG00000260059 | novel transcript | 3.4594 | 0.0000 | |
| 10 | ENSG00000261402 | novel transcript | 3.4154 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000146477 | SLC22A3 | solute carrier family 22 member 3 | -2.9156 | 0.0000 |
| 63340 | ENSG00000182631 | RXFP3 | relaxin family peptide receptor 3 | -2.9147 | 0.0000 |
| 63339 | ENSG00000163348 | PYGO2 | pygopus family PHD finger 2 | -2.9141 | 0.0000 |
| 63338 | ENSG00000227717 | golgin subfamily A member 6-like protein 22 | -2.9138 | 0.0046 | |
| 63337 | ENSG00000011114 | BTBD7 | BTB domain containing 7 | -2.9128 | 0.0000 |
| 63336 | ENSG00000229213 | microtubule-actin crosslinking factor 1 (MACF1) pseudogene | -2.9123 | 0.0000 | |
| 63335 | ENSG00000253808 | IGHVII-46-1 | immunoglobulin heavy variable (II)-46-1 (pseudogene) | -2.9117 | 0.0000 |
| 63334 | ENSG00000131080 | EDA2R | ectodysplasin A2 receptor | -2.9115 | 0.0000 |
| 63333 | ENSG00000135002 | RFK | riboflavin kinase | -2.9114 | 0.0000 |
| 63332 | ENSG00000279296 | PRAL | p53 regulation associated lncRNA | -2.9101 | 0.0000 |
