SHOGoiN Cell Methylome: GSM2773606

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773606


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M233Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000225602 MTOR-AS1 MTOR antisense RNA 1 3.7004 0.0000
2 ENSG00000228590 novel transcript 3.7004 0.0000
3 ENSG00000239180 NA 3.5850 0.0000
4 ENSG00000274421 novel transcript 3.5850 0.0000
5 ENSG00000281883 novel transcript 3.5850 0.0000
6 ENSG00000202398 RNU6-61P RNA, U6 small nuclear 61, pseudogene 3.5713 0.0000
7 ENSG00000204136 GGTA1P glycoprotein alpha-galactosyltransferase 1, pseudogene 3.4594 0.0000
8 ENSG00000206979 SNORD61 small nucleolar RNA, C/D box 61 3.4594 0.0000
9 ENSG00000260059 novel transcript 3.4594 0.0000
10 ENSG00000261402 novel transcript 3.4154 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000146477 SLC22A3 solute carrier family 22 member 3 -2.9156 0.0000
63340 ENSG00000182631 RXFP3 relaxin family peptide receptor 3 -2.9147 0.0000
63339 ENSG00000163348 PYGO2 pygopus family PHD finger 2 -2.9141 0.0000
63338 ENSG00000227717 golgin subfamily A member 6-like protein 22 -2.9138 0.0046
63337 ENSG00000011114 BTBD7 BTB domain containing 7 -2.9128 0.0000
63336 ENSG00000229213 microtubule-actin crosslinking factor 1 (MACF1) pseudogene -2.9123 0.0000
63335 ENSG00000253808 IGHVII-46-1 immunoglobulin heavy variable (II)-46-1 (pseudogene) -2.9117 0.0000
63334 ENSG00000131080 EDA2R ectodysplasin A2 receptor -2.9115 0.0000
63333 ENSG00000135002 RFK riboflavin kinase -2.9114 0.0000
63332 ENSG00000279296 PRAL p53 regulation associated lncRNA -2.9101 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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