Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773606

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773606 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M233	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000225602	MTOR-AS1	MTOR antisense RNA 1	3.7004	0.0000
2	ENSG00000228590		MIR4432 host gene	3.7004	0.0000
3	ENSG00000239180		Y RNA	3.5850	0.0000
4	ENSG00000274421		novel transcript	3.5850	0.0000
5	ENSG00000281883		novel transcript	3.5850	0.0000
6	ENSG00000202398	RNU6-61P	RNA, U6 small nuclear 61, pseudogene	3.5713	0.0000
7	ENSG00000204136	GGTA1	glycoprotein alpha-galactosyltransferase 1 (inactive)	3.4594	0.0000
8	ENSG00000206979	SNORD61	small nucleolar RNA, C/D box 61	3.4594	0.0000
9	ENSG00000260059		novel transcript	3.4594	0.0000
10	ENSG00000261402		novel transcript	3.4154	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000273706	LHX1	LIM homeobox 1	-2.8297	0.0000
63127	ENSG00000277171		novel zinc finger protein pseudogene	-2.8295	0.0074
63126	ENSG00000224482	HSFY4P	heat shock transcription factor Y-linked 4, pseudogene	-2.8295	0.0175
63125	ENSG00000128917	DLL4	delta like canonical Notch ligand 4	-2.8292	0.0000
63124	ENSG00000259952		novel transcript, antisense to MAZ	-2.8286	0.0000
63123	ENSG00000231914	LINC00387	long intergenic non-protein coding RNA 387	-2.8283	0.0000
63122	ENSG00000258345		novel transcript, antisense to ZC3H10 and ESYT1	-2.8280	0.0000
63121	ENSG00000234529	GAPDHP19	glyceraldehyde 3 phosphate dehydrogenase pseudogene 19	-2.8264	0.0050
63120	ENSG00000258731		novel transcript, antisense to DDHD1	-2.8261	0.0000
63119	ENSG00000166908	PIP4K2C	phosphatidylinositol-5-phosphate 4-kinase type 2 gamma	-2.8255	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...