Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773607

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773607


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M234Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000101336 HCK HCK proto-oncogene, Src family tyrosine kinase 4.5236 0.0000
2 ENSG00000212571 RNA5SP482 RNA, 5S ribosomal pseudogene 482 4.5236 0.0000
3 ENSG00000207176 Y RNA 4.0875 0.0000
4 ENSG00000225175 histidine-rich glycoprotein (HRG) pseudogene 4.0000 0.0000
5 ENSG00000260723 novel transcript, sense intronic to a novel protein 3.9198 0.0000
6 ENSG00000261394 novel transcript, antisense to a novel protein 3.9198 0.0000
7 ENSG00000278979 TEC 3.9198 0.0000
8 ENSG00000157538 VPS26C VPS26 endosomal protein sorting factor C 3.9069 0.0000
9 ENSG00000034713 GABARAPL2 GABA type A receptor associated protein like 2 3.7900 0.0000
10 ENSG00000276523 novel transcript, antisense to GABARAPL2 3.7900 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000128011 LRFN1 leucine rich repeat and fibronectin type III domain containing 1 -2.7544 0.0000
63127 ENSG00000282980 zinc finger, CCHC domain containing 9 (ZCCHC9) pseudogene -2.7535 0.0000
63126 ENSG00000213394 RPSAP46 ribosomal protein SA pseudogene 46 -2.7531 0.0000
63125 ENSG00000164080 RAD54L2 RAD54 like 2 -2.7531 0.0000
63124 ENSG00000225005 ribosomal protein L7a (RPL7A) pseudogene -2.7530 0.0000
63123 ENSG00000120328 PCDHB12 protocadherin beta 12 -2.7518 0.0000
63122 ENSG00000260661 novel transcript, antisense to SLCO3A1 -2.7518 0.0003
63121 ENSG00000230101 TUBB3P2 tubulin beta 3 class III pseudogene 2 -2.7510 0.0065
63120 ENSG00000151458 ANKRD50 ankyrin repeat domain 50 -2.7509 0.0000
63119 ENSG00000199053 MIR324 microRNA 324 -2.7507 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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