SHOGoiN Cell Methylome: GSM2773607

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773607


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M234Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000101336 HCK HCK proto-oncogene, Src family tyrosine kinase 4.5236 0.0000
2 ENSG00000212571 RNA5SP482 RNA, 5S ribosomal pseudogene 482 4.5236 0.0000
3 ENSG00000207176 NA 4.0875 0.0000
4 ENSG00000225175 histidine-rich glycoprotein (HRG) pseudogene 4.0000 0.0000
5 ENSG00000260723 novel transcript, sense intronic to a novel protein 3.9198 0.0000
6 ENSG00000261394 novel transcript, antisense to a novel protein 3.9198 0.0000
7 ENSG00000278979 TEC 3.9198 0.0000
8 ENSG00000157538 VPS26C VPS26 endosomal protein sorting factor C 3.9069 0.0000
9 ENSG00000034713 GABARAPL2 GABA type A receptor associated protein like 2 3.7900 0.0000
10 ENSG00000276523 novel transcript, antisense to GABARAPL2 3.7900 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000211866 TRAJ23 T cell receptor alpha joining 23 -2.8226 0.0000
63340 ENSG00000211865 TRAJ24 T cell receptor alpha joining 24 -2.8226 0.0000
63339 ENSG00000249449 MRPL57P6 mitochondrial ribosomal protein L57 pseudogene 6 -2.8219 0.1436
63338 ENSG00000237848 small nuclear ribonucleoprotein polypeptide F (SNRPF) pseudogene -2.8219 0.1436
63337 ENSG00000249302 FTH1P24 ferritin heavy chain 1 pseudogene 24 -2.8212 0.0000
63336 ENSG00000185737 NRG3 neuregulin 3 -2.8200 0.0000
63335 ENSG00000165698 SPACA9 sperm acrosome associated 9 -2.8196 0.0000
63334 ENSG00000241149 novel zinc finger protein -2.8192 0.0000
63333 ENSG00000240317 RN7SL764P RNA, 7SL, cytoplasmic 764, pseudogene -2.8183 0.0061
63332 ENSG00000231528 FAM225A family with sequence similarity 225 member A -2.8176 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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