Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773607

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773607 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M234	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000101336	HCK	HCK proto-oncogene, Src family tyrosine kinase	4.5236	0.0000
2	ENSG00000212571	RNA5SP482	RNA, 5S ribosomal pseudogene 482	4.5236	0.0000
3	ENSG00000207176		Y RNA	4.0875	0.0000
4	ENSG00000225175		histidine-rich glycoprotein (HRG) pseudogene	4.0000	0.0000
5	ENSG00000260723		novel transcript, sense intronic to a novel protein	3.9198	0.0000
6	ENSG00000261394		novel transcript, antisense to a novel protein	3.9198	0.0000
7	ENSG00000278979		TEC	3.9198	0.0000
8	ENSG00000157538	VPS26C	VPS26 endosomal protein sorting factor C	3.9069	0.0000
9	ENSG00000034713	GABARAPL2	GABA type A receptor associated protein like 2	3.7900	0.0000
10	ENSG00000276523		novel transcript, antisense to GABARAPL2	3.7900	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000128011	LRFN1	leucine rich repeat and fibronectin type III domain containing 1	-2.7544	0.0000
63127	ENSG00000282980		zinc finger, CCHC domain containing 9 (ZCCHC9) pseudogene	-2.7535	0.0000
63126	ENSG00000213394	RPSAP46	ribosomal protein SA pseudogene 46	-2.7531	0.0000
63125	ENSG00000164080	RAD54L2	RAD54 like 2	-2.7531	0.0000
63124	ENSG00000225005		ribosomal protein L7a (RPL7A) pseudogene	-2.7530	0.0000
63123	ENSG00000120328	PCDHB12	protocadherin beta 12	-2.7518	0.0000
63122	ENSG00000260661		novel transcript, antisense to SLCO3A1	-2.7518	0.0003
63121	ENSG00000230101	TUBB3P2	tubulin beta 3 class III pseudogene 2	-2.7510	0.0065
63120	ENSG00000151458	ANKRD50	ankyrin repeat domain 50	-2.7509	0.0000
63119	ENSG00000199053	MIR324	microRNA 324	-2.7507	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...