Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773607
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773607
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M234
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000101336
HCK
HCK proto-oncogene, Src family tyrosine kinase
4.5236
0.0000
2
ENSG00000212571
RNA5SP482
RNA, 5S ribosomal pseudogene 482
4.5236
0.0000
3
ENSG00000207176
Y RNA
4.0875
0.0000
4
ENSG00000225175
histidine-rich glycoprotein (HRG) pseudogene
4.0000
0.0000
5
ENSG00000260723
novel transcript, sense intronic to a novel protein
3.9198
0.0000
6
ENSG00000261394
novel transcript, antisense to a novel protein
3.9198
0.0000
7
ENSG00000278979
TEC
3.9198
0.0000
8
ENSG00000157538
VPS26C
VPS26 endosomal protein sorting factor C
3.9069
0.0000
9
ENSG00000034713
GABARAPL2
GABA type A receptor associated protein like 2
3.7900
0.0000
10
ENSG00000276523
novel transcript, antisense to GABARAPL2
3.7900
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000128011
LRFN1
leucine rich repeat and fibronectin type III domain containing 1
-2.7544
0.0000
63127
ENSG00000282980
zinc finger, CCHC domain containing 9 (ZCCHC9) pseudogene
-2.7535
0.0000
63126
ENSG00000213394
RPSAP46
ribosomal protein SA pseudogene 46
-2.7531
0.0000
63125
ENSG00000164080
RAD54L2
RAD54 like 2
-2.7531
0.0000
63124
ENSG00000225005
ribosomal protein L7a (RPL7A) pseudogene
-2.7530
0.0000
63123
ENSG00000120328
PCDHB12
protocadherin beta 12
-2.7518
0.0000
63122
ENSG00000260661
novel transcript, antisense to SLCO3A1
-2.7518
0.0003
63121
ENSG00000230101
TUBB3P2
tubulin beta 3 class III pseudogene 2
-2.7510
0.0065
63120
ENSG00000151458
ANKRD50
ankyrin repeat domain 50
-2.7509
0.0000
63119
ENSG00000199053
MIR324
microRNA 324
-2.7507
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...