SHOGoiN Cell Methylome: GSM2773607
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773607 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M234 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000101336 | HCK | HCK proto-oncogene, Src family tyrosine kinase | 4.5236 | 0.0000 |
| 2 | ENSG00000212571 | RNA5SP482 | RNA, 5S ribosomal pseudogene 482 | 4.5236 | 0.0000 |
| 3 | ENSG00000207176 | NA | 4.0875 | 0.0000 | |
| 4 | ENSG00000225175 | histidine-rich glycoprotein (HRG) pseudogene | 4.0000 | 0.0000 | |
| 5 | ENSG00000260723 | novel transcript, sense intronic to a novel protein | 3.9198 | 0.0000 | |
| 6 | ENSG00000261394 | novel transcript, antisense to a novel protein | 3.9198 | 0.0000 | |
| 7 | ENSG00000278979 | TEC | 3.9198 | 0.0000 | |
| 8 | ENSG00000157538 | VPS26C | VPS26 endosomal protein sorting factor C | 3.9069 | 0.0000 |
| 9 | ENSG00000034713 | GABARAPL2 | GABA type A receptor associated protein like 2 | 3.7900 | 0.0000 |
| 10 | ENSG00000276523 | novel transcript, antisense to GABARAPL2 | 3.7900 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000211866 | TRAJ23 | T cell receptor alpha joining 23 | -2.8226 | 0.0000 |
| 63340 | ENSG00000211865 | TRAJ24 | T cell receptor alpha joining 24 | -2.8226 | 0.0000 |
| 63339 | ENSG00000249449 | MRPL57P6 | mitochondrial ribosomal protein L57 pseudogene 6 | -2.8219 | 0.1436 |
| 63338 | ENSG00000237848 | small nuclear ribonucleoprotein polypeptide F (SNRPF) pseudogene | -2.8219 | 0.1436 | |
| 63337 | ENSG00000249302 | FTH1P24 | ferritin heavy chain 1 pseudogene 24 | -2.8212 | 0.0000 |
| 63336 | ENSG00000185737 | NRG3 | neuregulin 3 | -2.8200 | 0.0000 |
| 63335 | ENSG00000165698 | SPACA9 | sperm acrosome associated 9 | -2.8196 | 0.0000 |
| 63334 | ENSG00000241149 | novel zinc finger protein | -2.8192 | 0.0000 | |
| 63333 | ENSG00000240317 | RN7SL764P | RNA, 7SL, cytoplasmic 764, pseudogene | -2.8183 | 0.0061 |
| 63332 | ENSG00000231528 | FAM225A | family with sequence similarity 225 member A | -2.8176 | 0.0000 |
