Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773608

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773608


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M235Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202386 RNA5SP211 RNA, 5S ribosomal pseudogene 211 2.5850 0.0000
2 ENSG00000280149 TEC 2.3324 0.0000
3 ENSG00000102158 MAGT1 magnesium transporter 1 2.3219 0.0003
4 ENSG00000177432 NAP1L5 nucleosome assembly protein 1 like 5 2.3219 0.0000
5 ENSG00000218020 THAP12P5 THAP domain containing 12 pseudogene 5 2.3219 0.0000
6 ENSG00000220749 RPL21P28 ribosomal protein L21 pseudogene 28 2.3219 0.0000
7 ENSG00000224072 VEZTP1 VEZT pseudogene 1 2.3219 0.0003
8 ENSG00000228618 novel transcript 2.3219 0.0003
9 ENSG00000232795 SCAND3P1 SCAN domain containing 3 pseudogene 1 2.3219 0.0003
10 ENSG00000236876 TMSB4XP1 TMSB4X pseudogene 1 2.3219 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000217325 PRELID1P1 PRELID1 pseudogene 1 -1.8780 0.0442
63127 ENSG00000278740 novel transcript -1.8775 0.0000
63126 ENSG00000266588 novel transcript -1.8774 0.0000
63125 ENSG00000198853 RUSC2 RUN and SH3 domain containing 2 -1.8774 0.0000
63124 ENSG00000244953 novel transcript -1.8773 0.0000
63123 ENSG00000178645 C10orf53 chromosome 10 open reading frame 53 -1.8771 0.0017
63122 ENSG00000105939 ZC3HAV1 zinc finger CCCH-type containing, antiviral 1 -1.8769 0.0000
63121 ENSG00000169727 GPS1 G protein pathway suppressor 1 -1.8767 0.0000
63120 ENSG00000229239 eukaryotic translation elongation factor 1 alpha 2 (EEF1A2) pseudogene -1.8755 0.0416
63119 ENSG00000180539 C9orf139 chromosome 9 putative open reading frame 139 -1.8755 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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