SHOGoiN Cell Methylome: GSM2773608
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773608 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M235 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000202386 | RNA5SP211 | RNA, 5S ribosomal pseudogene 211 | 2.5850 | 0.0000 |
| 2 | ENSG00000280149 | TEC | 2.3324 | 0.0000 | |
| 3 | ENSG00000102158 | MAGT1 | magnesium transporter 1 | 2.3219 | 0.0003 |
| 4 | ENSG00000177432 | NAP1L5 | nucleosome assembly protein 1 like 5 | 2.3219 | 0.0000 |
| 5 | ENSG00000218020 | THAP12P5 | THAP domain containing 12 pseudogene 5 | 2.3219 | 0.0000 |
| 6 | ENSG00000220749 | RPL21P28 | ribosomal protein L21 pseudogene 28 | 2.3219 | 0.0000 |
| 7 | ENSG00000224072 | transmembrane protein vezatin pseudogene | 2.3219 | 0.0003 | |
| 8 | ENSG00000228618 | novel transcript | 2.3219 | 0.0003 | |
| 9 | ENSG00000232795 | SCAND3P1 | SCAN domain containing 3 pseudogene 1 | 2.3219 | 0.0003 |
| 10 | ENSG00000236876 | TMSB4XP1 | TMSB4X pseudogene 1 | 2.3219 | 0.0003 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000267731 | novel transcript | -1.9597 | 0.0000 | |
| 63340 | ENSG00000196776 | CD47 | CD47 molecule | -1.9590 | 0.0000 |
| 63339 | ENSG00000226436 | H3 histone, family 3B (H3.3B) (H3F3B) pseudogene | -1.9588 | 0.0049 | |
| 63338 | ENSG00000281383 | novel transcript, similar to YY1 associated myogenesis RNA 1 YAM1 | -1.9569 | 0.0000 | |
| 63337 | ENSG00000242732 | RTL5 | retrotransposon Gag like 5 | -1.9565 | 0.0000 |
| 63336 | ENSG00000173269 | MMRN2 | multimerin 2 | -1.9557 | 0.0000 |
| 63335 | ENSG00000140987 | ZSCAN32 | zinc finger and SCAN domain containing 32 | -1.9554 | 0.0000 |
| 63334 | ENSG00000222990 | RNU4-22P | RNA, U4 small nuclear 22, pseudogene | -1.9534 | 1.0000 |
| 63333 | ENSG00000206770 | NA | -1.9534 | 1.0000 | |
| 63332 | ENSG00000275572 | GRIFIN | galectin-related inter-fiber protein | -1.9531 | 0.0000 |
