Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773608
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773608
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M235
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000202386
RNA5SP211
RNA, 5S ribosomal pseudogene 211
2.5850
0.0000
2
ENSG00000280149
TEC
2.3324
0.0000
3
ENSG00000102158
MAGT1
magnesium transporter 1
2.3219
0.0003
4
ENSG00000177432
NAP1L5
nucleosome assembly protein 1 like 5
2.3219
0.0000
5
ENSG00000218020
THAP12P5
THAP domain containing 12 pseudogene 5
2.3219
0.0000
6
ENSG00000220749
RPL21P28
ribosomal protein L21 pseudogene 28
2.3219
0.0000
7
ENSG00000224072
VEZTP1
VEZT pseudogene 1
2.3219
0.0003
8
ENSG00000228618
novel transcript
2.3219
0.0003
9
ENSG00000232795
SCAND3P1
SCAN domain containing 3 pseudogene 1
2.3219
0.0003
10
ENSG00000236876
TMSB4XP1
TMSB4X pseudogene 1
2.3219
0.0003
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000217325
PRELID1P1
PRELID1 pseudogene 1
-1.8780
0.0442
63127
ENSG00000278740
novel transcript
-1.8775
0.0000
63126
ENSG00000266588
novel transcript
-1.8774
0.0000
63125
ENSG00000198853
RUSC2
RUN and SH3 domain containing 2
-1.8774
0.0000
63124
ENSG00000244953
novel transcript
-1.8773
0.0000
63123
ENSG00000178645
C10orf53
chromosome 10 open reading frame 53
-1.8771
0.0017
63122
ENSG00000105939
ZC3HAV1
zinc finger CCCH-type containing, antiviral 1
-1.8769
0.0000
63121
ENSG00000169727
GPS1
G protein pathway suppressor 1
-1.8767
0.0000
63120
ENSG00000229239
eukaryotic translation elongation factor 1 alpha 2 (EEF1A2) pseudogene
-1.8755
0.0416
63119
ENSG00000180539
C9orf139
chromosome 9 putative open reading frame 139
-1.8755
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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