Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773608

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773608 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M235	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000202386	RNA5SP211	RNA, 5S ribosomal pseudogene 211	2.5850	0.0000
2	ENSG00000280149		TEC	2.3324	0.0000
3	ENSG00000102158	MAGT1	magnesium transporter 1	2.3219	0.0003
4	ENSG00000177432	NAP1L5	nucleosome assembly protein 1 like 5	2.3219	0.0000
5	ENSG00000218020	THAP12P5	THAP domain containing 12 pseudogene 5	2.3219	0.0000
6	ENSG00000220749	RPL21P28	ribosomal protein L21 pseudogene 28	2.3219	0.0000
7	ENSG00000224072	VEZTP1	VEZT pseudogene 1	2.3219	0.0003
8	ENSG00000228618		novel transcript	2.3219	0.0003
9	ENSG00000232795	SCAND3P1	SCAN domain containing 3 pseudogene 1	2.3219	0.0003
10	ENSG00000236876	TMSB4XP1	TMSB4X pseudogene 1	2.3219	0.0003

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000217325	PRELID1P1	PRELID1 pseudogene 1	-1.8780	0.0442
63127	ENSG00000278740		novel transcript	-1.8775	0.0000
63126	ENSG00000266588		novel transcript	-1.8774	0.0000
63125	ENSG00000198853	RUSC2	RUN and SH3 domain containing 2	-1.8774	0.0000
63124	ENSG00000244953		novel transcript	-1.8773	0.0000
63123	ENSG00000178645	C10orf53	chromosome 10 open reading frame 53	-1.8771	0.0017
63122	ENSG00000105939	ZC3HAV1	zinc finger CCCH-type containing, antiviral 1	-1.8769	0.0000
63121	ENSG00000169727	GPS1	G protein pathway suppressor 1	-1.8767	0.0000
63120	ENSG00000229239		eukaryotic translation elongation factor 1 alpha 2 (EEF1A2) pseudogene	-1.8755	0.0416
63119	ENSG00000180539	C9orf139	chromosome 9 putative open reading frame 139	-1.8755	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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