SHOGoiN Cell Methylome: GSM2773608

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773608


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M235Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202386 RNA5SP211 RNA, 5S ribosomal pseudogene 211 2.5850 0.0000
2 ENSG00000280149 TEC 2.3324 0.0000
3 ENSG00000102158 MAGT1 magnesium transporter 1 2.3219 0.0003
4 ENSG00000177432 NAP1L5 nucleosome assembly protein 1 like 5 2.3219 0.0000
5 ENSG00000218020 THAP12P5 THAP domain containing 12 pseudogene 5 2.3219 0.0000
6 ENSG00000220749 RPL21P28 ribosomal protein L21 pseudogene 28 2.3219 0.0000
7 ENSG00000224072 transmembrane protein vezatin pseudogene 2.3219 0.0003
8 ENSG00000228618 novel transcript 2.3219 0.0003
9 ENSG00000232795 SCAND3P1 SCAN domain containing 3 pseudogene 1 2.3219 0.0003
10 ENSG00000236876 TMSB4XP1 TMSB4X pseudogene 1 2.3219 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000267731 novel transcript -1.9597 0.0000
63340 ENSG00000196776 CD47 CD47 molecule -1.9590 0.0000
63339 ENSG00000226436 H3 histone, family 3B (H3.3B) (H3F3B) pseudogene -1.9588 0.0049
63338 ENSG00000281383 novel transcript, similar to YY1 associated myogenesis RNA 1 YAM1 -1.9569 0.0000
63337 ENSG00000242732 RTL5 retrotransposon Gag like 5 -1.9565 0.0000
63336 ENSG00000173269 MMRN2 multimerin 2 -1.9557 0.0000
63335 ENSG00000140987 ZSCAN32 zinc finger and SCAN domain containing 32 -1.9554 0.0000
63334 ENSG00000222990 RNU4-22P RNA, U4 small nuclear 22, pseudogene -1.9534 1.0000
63333 ENSG00000206770 NA -1.9534 1.0000
63332 ENSG00000275572 GRIFIN galectin-related inter-fiber protein -1.9531 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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