SHOGoiN Cell Methylome: GSM2773609
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773609 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M236 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000232203 | SLC25A6P2 | solute carrier family 25 member 6 pseudogene 2 | 3.7004 | 0.0000 |
| 2 | ENSG00000257138 | TAS2R38 | taste 2 receptor member 38 | 2.8074 | 0.0000 |
| 3 | ENSG00000258235 | novel transcript | 2.8074 | 0.0000 | |
| 4 | ENSG00000222145 | NA | 2.5850 | 0.0001 | |
| 5 | ENSG00000170681 | CAVIN4 | caveolae associated protein 4 | 2.5615 | 0.0000 |
| 6 | ENSG00000172150 | OR1A2 | olfactory receptor family 1 subfamily A member 2 | 2.3333 | 0.0000 |
| 7 | ENSG00000165169 | DYNLT3 | dynein light chain Tctex-type 3 | 2.3219 | 0.0004 |
| 8 | ENSG00000200732 | RNU6-194P | RNA, U6 small nuclear 194, pseudogene | 2.3219 | 0.0000 |
| 9 | ENSG00000207144 | RNU6-1297P | RNA, U6 small nuclear 1297, pseudogene | 2.3219 | 0.0000 |
| 10 | ENSG00000226113 | phospholipase D family member 5 (PLD5) pseudogene | 2.3219 | 0.0004 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000176435 | CLEC14A | C-type lectin domain containing 14A | -1.9638 | 0.0000 |
| 63340 | ENSG00000252892 | RNU6-548P | RNA, U6 small nuclear 548, pseudogene | -1.9636 | 0.0000 |
| 63339 | ENSG00000283321 | novel protein | -1.9636 | 0.0000 | |
| 63338 | ENSG00000167702 | KIFC2 | kinesin family member C2 | -1.9634 | 0.0000 |
| 63337 | ENSG00000259467 | NDUFAF4P1 | NADH:ubiquinone oxidoreductase complex assembly factor 4 pseudogene 1 | -1.9632 | 0.0559 |
| 63336 | ENSG00000200624 | RNA5S6 | RNA, 5S ribosomal 6 | -1.9627 | 0.0000 |
| 63335 | ENSG00000151881 | TMEM267 | transmembrane protein 267 | -1.9623 | 0.0286 |
| 63334 | ENSG00000251022 | THAP9-AS1 | THAP9 antisense RNA 1 | -1.9608 | 0.0000 |
| 63333 | ENSG00000253846 | PCDHGA10 | protocadherin gamma subfamily A, 10 | -1.9606 | 0.0000 |
| 63332 | ENSG00000174697 | LEP | leptin | -1.9600 | 0.0000 |
