Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773609

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773609 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M236	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000232203	SLC25A6P2	solute carrier family 25 member 6 pseudogene 2	3.7004	0.0000
2	ENSG00000257138	TAS2R38	taste 2 receptor member 38	2.8074	0.0000
3	ENSG00000258235		novel transcript	2.8074	0.0000
4	ENSG00000222145		Small nucleolar RNA SNORA73 family	2.5850	0.0001
5	ENSG00000170681	CAVIN4	caveolae associated protein 4	2.5615	0.0000
6	ENSG00000172150	OR1A2	olfactory receptor family 1 subfamily A member 2	2.3333	0.0000
7	ENSG00000165169	DYNLT3	dynein light chain Tctex-type 3	2.3219	0.0004
8	ENSG00000200732	RNU6-194P	RNA, U6 small nuclear 194, pseudogene	2.3219	0.0000
9	ENSG00000207144	RNU6-1297P	RNA, U6 small nuclear 1297, pseudogene	2.3219	0.0000
10	ENSG00000226113		phospholipase D family member 5 (PLD5) pseudogene	2.3219	0.0004

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000224294	PINCR	p53-induced noncoding RNA	-1.8813	0.0960
63127	ENSG00000127564	PKMYT1	protein kinase, membrane associated tyrosine/threonine 1	-1.8811	0.0000
63126	ENSG00000178295	GEN1	GEN1 Holliday junction 5' flap endonuclease	-1.8809	0.0000
63125	ENSG00000214796	TUBA5P	tubulin alpha 5, pseudogene	-1.8805	0.0000
63124	ENSG00000164588	HCN1	hyperpolarization activated cyclic nucleotide gated potassium channel 1	-1.8801	0.0000
63123	ENSG00000259338	H3P39	H3 histone pseudogene 39	-1.8800	0.0000
63122	ENSG00000204393	NOL4L-DT	NOL4L divergent transcript	-1.8796	0.0000
63121	ENSG00000205212	CCDC144NL	CCDC144A N-terminal pseudogene	-1.8791	0.0000
63120	ENSG00000279930		TEC	-1.8787	0.0000
63119	ENSG00000273619		novel transcript, antisense to RPS21	-1.8782	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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