Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773609
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773609
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M236
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000232203
SLC25A6P2
solute carrier family 25 member 6 pseudogene 2
3.7004
0.0000
2
ENSG00000257138
TAS2R38
taste 2 receptor member 38
2.8074
0.0000
3
ENSG00000258235
novel transcript
2.8074
0.0000
4
ENSG00000222145
Small nucleolar RNA SNORA73 family
2.5850
0.0001
5
ENSG00000170681
CAVIN4
caveolae associated protein 4
2.5615
0.0000
6
ENSG00000172150
OR1A2
olfactory receptor family 1 subfamily A member 2
2.3333
0.0000
7
ENSG00000165169
DYNLT3
dynein light chain Tctex-type 3
2.3219
0.0004
8
ENSG00000200732
RNU6-194P
RNA, U6 small nuclear 194, pseudogene
2.3219
0.0000
9
ENSG00000207144
RNU6-1297P
RNA, U6 small nuclear 1297, pseudogene
2.3219
0.0000
10
ENSG00000226113
phospholipase D family member 5 (PLD5) pseudogene
2.3219
0.0004
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000224294
PINCR
p53-induced noncoding RNA
-1.8813
0.0960
63127
ENSG00000127564
PKMYT1
protein kinase, membrane associated tyrosine/threonine 1
-1.8811
0.0000
63126
ENSG00000178295
GEN1
GEN1 Holliday junction 5' flap endonuclease
-1.8809
0.0000
63125
ENSG00000214796
TUBA5P
tubulin alpha 5, pseudogene
-1.8805
0.0000
63124
ENSG00000164588
HCN1
hyperpolarization activated cyclic nucleotide gated potassium channel 1
-1.8801
0.0000
63123
ENSG00000259338
H3P39
H3 histone pseudogene 39
-1.8800
0.0000
63122
ENSG00000204393
NOL4L-DT
NOL4L divergent transcript
-1.8796
0.0000
63121
ENSG00000205212
CCDC144NL
CCDC144A N-terminal pseudogene
-1.8791
0.0000
63120
ENSG00000279930
TEC
-1.8787
0.0000
63119
ENSG00000273619
novel transcript, antisense to RPS21
-1.8782
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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