SHOGoiN Cell Methylome: GSM2773609

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773609


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M236Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000232203 SLC25A6P2 solute carrier family 25 member 6 pseudogene 2 3.7004 0.0000
2 ENSG00000257138 TAS2R38 taste 2 receptor member 38 2.8074 0.0000
3 ENSG00000258235 novel transcript 2.8074 0.0000
4 ENSG00000222145 NA 2.5850 0.0001
5 ENSG00000170681 CAVIN4 caveolae associated protein 4 2.5615 0.0000
6 ENSG00000172150 OR1A2 olfactory receptor family 1 subfamily A member 2 2.3333 0.0000
7 ENSG00000165169 DYNLT3 dynein light chain Tctex-type 3 2.3219 0.0004
8 ENSG00000200732 RNU6-194P RNA, U6 small nuclear 194, pseudogene 2.3219 0.0000
9 ENSG00000207144 RNU6-1297P RNA, U6 small nuclear 1297, pseudogene 2.3219 0.0000
10 ENSG00000226113 phospholipase D family member 5 (PLD5) pseudogene 2.3219 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000176435 CLEC14A C-type lectin domain containing 14A -1.9638 0.0000
63340 ENSG00000252892 RNU6-548P RNA, U6 small nuclear 548, pseudogene -1.9636 0.0000
63339 ENSG00000283321 novel protein -1.9636 0.0000
63338 ENSG00000167702 KIFC2 kinesin family member C2 -1.9634 0.0000
63337 ENSG00000259467 NDUFAF4P1 NADH:ubiquinone oxidoreductase complex assembly factor 4 pseudogene 1 -1.9632 0.0559
63336 ENSG00000200624 RNA5S6 RNA, 5S ribosomal 6 -1.9627 0.0000
63335 ENSG00000151881 TMEM267 transmembrane protein 267 -1.9623 0.0286
63334 ENSG00000251022 THAP9-AS1 THAP9 antisense RNA 1 -1.9608 0.0000
63333 ENSG00000253846 PCDHGA10 protocadherin gamma subfamily A, 10 -1.9606 0.0000
63332 ENSG00000174697 LEP leptin -1.9600 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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