Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773609

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773609


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M236Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000232203 SLC25A6P2 solute carrier family 25 member 6 pseudogene 2 3.7004 0.0000
2 ENSG00000257138 TAS2R38 taste 2 receptor member 38 2.8074 0.0000
3 ENSG00000258235 novel transcript 2.8074 0.0000
4 ENSG00000222145 Small nucleolar RNA SNORA73 family 2.5850 0.0001
5 ENSG00000170681 CAVIN4 caveolae associated protein 4 2.5615 0.0000
6 ENSG00000172150 OR1A2 olfactory receptor family 1 subfamily A member 2 2.3333 0.0000
7 ENSG00000165169 DYNLT3 dynein light chain Tctex-type 3 2.3219 0.0004
8 ENSG00000200732 RNU6-194P RNA, U6 small nuclear 194, pseudogene 2.3219 0.0000
9 ENSG00000207144 RNU6-1297P RNA, U6 small nuclear 1297, pseudogene 2.3219 0.0000
10 ENSG00000226113 phospholipase D family member 5 (PLD5) pseudogene 2.3219 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000224294 PINCR p53-induced noncoding RNA -1.8813 0.0960
63127 ENSG00000127564 PKMYT1 protein kinase, membrane associated tyrosine/threonine 1 -1.8811 0.0000
63126 ENSG00000178295 GEN1 GEN1 Holliday junction 5' flap endonuclease -1.8809 0.0000
63125 ENSG00000214796 TUBA5P tubulin alpha 5, pseudogene -1.8805 0.0000
63124 ENSG00000164588 HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 -1.8801 0.0000
63123 ENSG00000259338 H3P39 H3 histone pseudogene 39 -1.8800 0.0000
63122 ENSG00000204393 NOL4L-DT NOL4L divergent transcript -1.8796 0.0000
63121 ENSG00000205212 CCDC144NL CCDC144A N-terminal pseudogene -1.8791 0.0000
63120 ENSG00000279930 TEC -1.8787 0.0000
63119 ENSG00000273619 novel transcript, antisense to RPS21 -1.8782 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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