Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773610

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773610


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M237Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000187175 KRTAP12-1 keratin associated protein 12-1 3.1962 0.0000
2 ENSG00000229968 C2H2 type zinc finger pseudogene 3.1699 0.0000
3 ENSG00000244332 novel transcript 3.1699 0.0000
4 ENSG00000214035 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2) pseudogene 3.0000 0.0000
5 ENSG00000236343 EI24P4 EI24 pseudogene 4 3.0000 0.0000
6 ENSG00000250197 HMGN1P15 high mobility group nucleosome binding domain 1 pseudogene 15 3.0000 0.0000
7 ENSG00000251804 RNU6-1294P RNA, U6 small nuclear 1294, pseudogene 3.0000 0.0000
8 ENSG00000238079 novel pseudogene 2.8873 0.0000
9 ENSG00000127780 OR1E2 olfactory receptor family 1 subfamily E member 2 2.8074 0.0000
10 ENSG00000187325 TAF9B TATA-box binding protein associated factor 9b 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000212452 SNORD69 small nucleolar RNA, C/D box 69 -2.3156 0.0000
63127 ENSG00000265975 novel transcript -2.3154 0.0000
63126 ENSG00000232112 TMA7 translation machinery associated 7 homolog -2.3151 0.0000
63125 ENSG00000212498 SNORD86 small nucleolar RNA, C/D box 86 -2.3142 0.0000
63124 ENSG00000197977 ELOVL2 ELOVL fatty acid elongase 2 -2.3142 0.0000
63123 ENSG00000263612 novel transcript -2.3140 0.0000
63122 ENSG00000060762 MPC1 mitochondrial pyruvate carrier 1 -2.3135 0.0000
63121 ENSG00000282936 novel protein -2.3126 0.0000
63120 ENSG00000129235 TXNDC17 thioredoxin domain containing 17 -2.3126 0.0000
10 ENSG00000187325 TAF9B TATA-box binding protein associated factor 9b 2.8074 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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