SHOGoiN Cell Methylome: GSM2773610

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773610


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M237Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000187175 KRTAP12-1 keratin associated protein 12-1 3.1962 0.0000
2 ENSG00000229968 C2H2 type zinc finger pseudogene 3.1699 0.0000
3 ENSG00000244332 novel transcript 3.1699 0.0000
4 ENSG00000214035 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2) pseudogene 3.0000 0.0000
5 ENSG00000236343 EI24P4 EI24 pseudogene 4 3.0000 0.0000
6 ENSG00000250197 HMGN1P15 high mobility group nucleosome binding domain 1 pseudogene 15 3.0000 0.0000
7 ENSG00000251804 RNU6-1294P RNA, U6 small nuclear 1294, pseudogene 3.0000 0.0000
8 ENSG00000238079 novel pseudogene 2.8873 0.0000
9 ENSG00000127780 OR1E2 olfactory receptor family 1 subfamily E member 2 2.8074 0.0000
10 ENSG00000187325 TAF9B TATA-box binding protein associated factor 9b 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000128989 ARPP19 cAMP regulated phosphoprotein 19 -2.3774 0.0000
63340 ENSG00000283635 novel transcript, antisense to PER2 -2.3764 0.0000
63339 ENSG00000231252 novel transcript -2.3752 0.0000
63338 ENSG00000148680 HTR7 5-hydroxytryptamine receptor 7 -2.3745 0.0000
63337 ENSG00000176692 FOXC2 forkhead box C2 -2.3732 0.0000
63336 ENSG00000252034 RNY4P37 RNY4 pseudogene 37 -2.3728 0.0000
63335 ENSG00000250786 SNHG18 small nucleolar RNA host gene 18 -2.3728 0.0000
63334 ENSG00000152475 ZNF837 zinc finger protein 837 -2.3723 0.0000
63333 ENSG00000215417 MIR17HG miR-17-92a-1 cluster host gene -2.3722 0.0000
63332 ENSG00000224958 PGM5-AS1 PGM5 antisense RNA 1 -2.3718 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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