Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773611

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773611 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M238	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000261037		novel transcript	3.0000	0.0000
2	ENSG00000255033	SERPINA15P	serpin family A member 15, pseudogene	2.8074	0.0000
3	ENSG00000227888	FAM66A	family with sequence similarity 66 member A	2.5850	0.0000
4	ENSG00000254044		novel transcript, sense overlapping to STPG2	2.5850	0.0001
5	ENSG00000256211	SKP1P2	S-phase kinase associated protein 1 pseudogene 2	2.5850	0.0001
6	ENSG00000278085	CT45A8	cancer/testis antigen family 45 member A8	2.5850	0.0001
7	ENSG00000199450	RNA5SP276	RNA, 5S ribosomal pseudogene 276	2.3219	0.0004
8	ENSG00000219487		small nuclear ribonucleoprotein polypeptide B'' (SNRPB2) pseudogene	2.3219	0.0000
9	ENSG00000223905		peroxiredoxin 5 (PRDX5) pseudogene	2.3219	0.0004
10	ENSG00000227676	LINC01068	long intergenic non-protein coding RNA 1068	2.3219	0.0004

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000265188		transforming, acidic coiled-coil containing protein (TACC3) pseudogene	-1.8215	0.0000
63127	ENSG00000235760	MSH2-OT1	MSH2 overlapping transcript 1	-1.8214	0.0000
63126	ENSG00000226757		uncharacterized LOC100192379	-1.8213	0.0008
63125	ENSG00000283973		novel transcript	-1.8213	0.0000
63124	ENSG00000187801	ZFP69B	ZFP69 zinc finger protein B	-1.8211	0.0000
63123	ENSG00000244738		novel transcript	-1.8211	0.0625
63122	ENSG00000251680		novel transcript	-1.8209	0.0000
63121	ENSG00000276436		novel transcript, antisense to KPNA3	-1.8208	0.0000
63120	ENSG00000207408		Y RNA	-1.8207	0.0000
63119	ENSG00000272455	MRPL20-DT	MRPL20 divergent transcript	-1.8204	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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