SHOGoiN Cell Methylome: GSM2773611
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773611 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M238 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000261037 | novel transcript | 3.0000 | 0.0000 | |
| 2 | ENSG00000255033 | SERPINA15P | serpin family A member 15, pseudogene | 2.8074 | 0.0000 |
| 3 | ENSG00000227888 | FAM66A | family with sequence similarity 66 member A | 2.5850 | 0.0000 |
| 4 | ENSG00000254044 | novel transcript, sense overlapping to STPG2 | 2.5850 | 0.0001 | |
| 5 | ENSG00000256211 | S-phase kinase-associated protein 1 (SKP1) pseudogene | 2.5850 | 0.0001 | |
| 6 | ENSG00000278085 | CT45A8 | cancer/testis antigen family 45 member A8 | 2.5850 | 0.0001 |
| 7 | ENSG00000199450 | RNA5SP276 | RNA, 5S ribosomal pseudogene 276 | 2.3219 | 0.0004 |
| 8 | ENSG00000219487 | small nuclear ribonucleoprotein polypeptide B'' (SNRPB2) pseudogene | 2.3219 | 0.0000 | |
| 9 | ENSG00000223905 | peroxiredoxin 5 (PRDX5) pseudogene | 2.3219 | 0.0004 | |
| 10 | ENSG00000227676 | LINC01068 | long intergenic non-protein coding RNA 1068 | 2.3219 | 0.0004 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000226961 | PPIAP60 | peptidylprolyl isomerase A pseudogene 60 | -1.8904 | 0.0000 |
| 63340 | ENSG00000268433 | MTDHP3 | metadherin pseudogene 3 | -1.8904 | 0.0095 |
| 63339 | ENSG00000262890 | novel transcript | -1.8902 | 0.0000 | |
| 63338 | ENSG00000262296 | novel transcript, antisense to USP43 | -1.8897 | 0.0000 | |
| 63337 | ENSG00000278017 | novel transcript, antisense to ZCCHC2 | -1.8890 | 0.0000 | |
| 63336 | ENSG00000255193 | novel transcript | -1.8889 | 0.0403 | |
| 63335 | ENSG00000169955 | ZNF747 | zinc finger protein 747 | -1.8886 | 0.0000 |
| 63334 | ENSG00000124279 | FASTKD3 | FAST kinase domains 3 | -1.8883 | 0.0001 |
| 63333 | ENSG00000252714 | RNA5SP392 | RNA, 5S ribosomal pseudogene 392 | -1.8879 | 0.0000 |
| 63332 | ENSG00000205791 | LOH12CR2 | loss of heterozygosity, 12, chromosomal region 2 | -1.8876 | 0.0000 |
