Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773611
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773611
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M238
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000261037
novel transcript
3.0000
0.0000
2
ENSG00000255033
SERPINA15P
serpin family A member 15, pseudogene
2.8074
0.0000
3
ENSG00000227888
FAM66A
family with sequence similarity 66 member A
2.5850
0.0000
4
ENSG00000254044
novel transcript, sense overlapping to STPG2
2.5850
0.0001
5
ENSG00000256211
SKP1P2
S-phase kinase associated protein 1 pseudogene 2
2.5850
0.0001
6
ENSG00000278085
CT45A8
cancer/testis antigen family 45 member A8
2.5850
0.0001
7
ENSG00000199450
RNA5SP276
RNA, 5S ribosomal pseudogene 276
2.3219
0.0004
8
ENSG00000219487
small nuclear ribonucleoprotein polypeptide B'' (SNRPB2) pseudogene
2.3219
0.0000
9
ENSG00000223905
peroxiredoxin 5 (PRDX5) pseudogene
2.3219
0.0004
10
ENSG00000227676
LINC01068
long intergenic non-protein coding RNA 1068
2.3219
0.0004
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000265188
transforming, acidic coiled-coil containing protein (TACC3) pseudogene
-1.8215
0.0000
63127
ENSG00000235760
MSH2-OT1
MSH2 overlapping transcript 1
-1.8214
0.0000
63126
ENSG00000226757
uncharacterized LOC100192379
-1.8213
0.0008
63125
ENSG00000283973
novel transcript
-1.8213
0.0000
63124
ENSG00000187801
ZFP69B
ZFP69 zinc finger protein B
-1.8211
0.0000
63123
ENSG00000244738
novel transcript
-1.8211
0.0625
63122
ENSG00000251680
novel transcript
-1.8209
0.0000
63121
ENSG00000276436
novel transcript, antisense to KPNA3
-1.8208
0.0000
63120
ENSG00000207408
Y RNA
-1.8207
0.0000
63119
ENSG00000272455
MRPL20-DT
MRPL20 divergent transcript
-1.8204
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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