SHOGoiN Cell Methylome: GSM2773611

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773611


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M238Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000261037 novel transcript 3.0000 0.0000
2 ENSG00000255033 SERPINA15P serpin family A member 15, pseudogene 2.8074 0.0000
3 ENSG00000227888 FAM66A family with sequence similarity 66 member A 2.5850 0.0000
4 ENSG00000254044 novel transcript, sense overlapping to STPG2 2.5850 0.0001
5 ENSG00000256211 S-phase kinase-associated protein 1 (SKP1) pseudogene 2.5850 0.0001
6 ENSG00000278085 CT45A8 cancer/testis antigen family 45 member A8 2.5850 0.0001
7 ENSG00000199450 RNA5SP276 RNA, 5S ribosomal pseudogene 276 2.3219 0.0004
8 ENSG00000219487 small nuclear ribonucleoprotein polypeptide B'' (SNRPB2) pseudogene 2.3219 0.0000
9 ENSG00000223905 peroxiredoxin 5 (PRDX5) pseudogene 2.3219 0.0004
10 ENSG00000227676 LINC01068 long intergenic non-protein coding RNA 1068 2.3219 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000226961 PPIAP60 peptidylprolyl isomerase A pseudogene 60 -1.8904 0.0000
63340 ENSG00000268433 MTDHP3 metadherin pseudogene 3 -1.8904 0.0095
63339 ENSG00000262890 novel transcript -1.8902 0.0000
63338 ENSG00000262296 novel transcript, antisense to USP43 -1.8897 0.0000
63337 ENSG00000278017 novel transcript, antisense to ZCCHC2 -1.8890 0.0000
63336 ENSG00000255193 novel transcript -1.8889 0.0403
63335 ENSG00000169955 ZNF747 zinc finger protein 747 -1.8886 0.0000
63334 ENSG00000124279 FASTKD3 FAST kinase domains 3 -1.8883 0.0001
63333 ENSG00000252714 RNA5SP392 RNA, 5S ribosomal pseudogene 392 -1.8879 0.0000
63332 ENSG00000205791 LOH12CR2 loss of heterozygosity, 12, chromosomal region 2 -1.8876 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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