Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773611

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773611


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M238Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000261037 novel transcript 3.0000 0.0000
2 ENSG00000255033 SERPINA15P serpin family A member 15, pseudogene 2.8074 0.0000
3 ENSG00000227888 FAM66A family with sequence similarity 66 member A 2.5850 0.0000
4 ENSG00000254044 novel transcript, sense overlapping to STPG2 2.5850 0.0001
5 ENSG00000256211 SKP1P2 S-phase kinase associated protein 1 pseudogene 2 2.5850 0.0001
6 ENSG00000278085 CT45A8 cancer/testis antigen family 45 member A8 2.5850 0.0001
7 ENSG00000199450 RNA5SP276 RNA, 5S ribosomal pseudogene 276 2.3219 0.0004
8 ENSG00000219487 small nuclear ribonucleoprotein polypeptide B'' (SNRPB2) pseudogene 2.3219 0.0000
9 ENSG00000223905 peroxiredoxin 5 (PRDX5) pseudogene 2.3219 0.0004
10 ENSG00000227676 LINC01068 long intergenic non-protein coding RNA 1068 2.3219 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000265188 transforming, acidic coiled-coil containing protein (TACC3) pseudogene -1.8215 0.0000
63127 ENSG00000235760 MSH2-OT1 MSH2 overlapping transcript 1 -1.8214 0.0000
63126 ENSG00000226757 uncharacterized LOC100192379 -1.8213 0.0008
63125 ENSG00000283973 novel transcript -1.8213 0.0000
63124 ENSG00000187801 ZFP69B ZFP69 zinc finger protein B -1.8211 0.0000
63123 ENSG00000244738 novel transcript -1.8211 0.0625
63122 ENSG00000251680 novel transcript -1.8209 0.0000
63121 ENSG00000276436 novel transcript, antisense to KPNA3 -1.8208 0.0000
63120 ENSG00000207408 Y RNA -1.8207 0.0000
63119 ENSG00000272455 MRPL20-DT MRPL20 divergent transcript -1.8204 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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