Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773612

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773612


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M239Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000186086 NBPF6 NBPF member 6 2.8074 0.0000
2 ENSG00000156575 PRG3 proteoglycan 3, pro eosinophil major basic protein 2 2.6591 0.0000
3 ENSG00000275293 Metazoan signal recognition particle RNA 2.5850 0.0000
4 ENSG00000252517 NA 2.4973 0.0000
5 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 2.3219 0.0008
6 ENSG00000197683 KRTAP26-1 keratin associated protein 26-1 2.3219 0.0008
7 ENSG00000202473 RN7SKP81 RN7SK pseudogene 81 2.3219 0.0008
8 ENSG00000212457 RNU6-644P RNA, U6 small nuclear 644, pseudogene 2.3219 0.0000
9 ENSG00000214025 ATP5PBP4 ATP synthase peripheral stalk-membrane subunit b pseudogene 4 2.3219 0.0000
10 ENSG00000225775 novel transcript 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000264141 MIR3928 microRNA 3928 -1.7824 0.0000
63127 ENSG00000283480 novel transcript, antisense to SOX4 -1.7814 0.0000
63126 ENSG00000162194 LBHD1 LBH domain containing 1 -1.7809 0.0000
63125 ENSG00000260239 LINC02533 long intergenic non-protein coding RNA 2533 -1.7804 0.0000
63124 ENSG00000113070 HBEGF heparin binding EGF like growth factor -1.7800 0.0000
63123 ENSG00000271350 arsA arsenite transporter, ATP-binding, homolog 1 (bacterial), pseudogene -1.7795 0.0000
63122 ENSG00000279601 TEC -1.7793 0.0000
63121 ENSG00000103355 PRSS33 serine protease 33 -1.7793 0.0000
63120 ENSG00000199347 RNU5E-1 RNA, U5E small nuclear 1 -1.7792 0.0000
63119 ENSG00000274481 sulfiredoxin 1 (SRXN1) pseudogene -1.7792 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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