SHOGoiN Cell Methylome: GSM2773612

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773612


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M239Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000186086 NBPF6 NBPF member 6 2.8074 0.0000
2 ENSG00000156575 PRG3 proteoglycan 3, pro eosinophil major basic protein 2 2.6591 0.0000
3 ENSG00000275293 NA 2.5850 0.0000
4 ENSG00000252517 NA 2.4973 0.0000
5 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 2.3219 0.0008
6 ENSG00000197683 KRTAP26-1 keratin associated protein 26-1 2.3219 0.0008
7 ENSG00000202473 RN7SKP81 RN7SK pseudogene 81 2.3219 0.0008
8 ENSG00000212457 RNU6-644P RNA, U6 small nuclear 644, pseudogene 2.3219 0.0000
9 ENSG00000214025 ATP5PBP4 ATP synthase peripheral stalk-membrane subunit b pseudogene 4 2.3219 0.0000
10 ENSG00000225775 novel transcript 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000175066 GK5 glycerol kinase 5 -1.8638 0.0000
63340 ENSG00000172985 SH3RF3 SH3 domain containing ring finger 3 -1.8629 0.0000
63339 ENSG00000237087 novel transcript -1.8629 0.0000
63338 ENSG00000272455 novel transcript -1.8622 0.0000
63337 ENSG00000270554 eukaryotic translation initiation factor 3, subunit E, pseudogene -1.8617 0.3670
63336 ENSG00000253484 novel transcript -1.8617 0.3670
63335 ENSG00000223977 zinc finger protein 141 (ZNF141) pseudogene -1.8617 0.3670
63334 ENSG00000168569 transmembrane protein 223 -1.8615 0.0000
63333 ENSG00000271746 novel transcript, antisense to ACOT7 -1.8608 0.0000
63332 ENSG00000233492 novel transcript -1.8607 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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