Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773613

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773613


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M240Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204814 novel transcript 3.0000 0.0000
2 ENSG00000181023 OR56B1 olfactory receptor family 56 subfamily B member 1 2.4014 0.0000
3 ENSG00000219453 ferritin pseudogene 2.0000 0.0029
4 ENSG00000222623 RNU6-1100P RNA, U6 small nuclear 1100, pseudogene 2.0000 0.0029
5 ENSG00000241599 novel transcript 2.0000 0.0029
6 ENSG00000249259 rearranged L-myc fusion (RLF) pseudogene 2.0000 0.0000
7 ENSG00000253059 NA 2.0000 0.0000
8 ENSG00000263393 novel transcript, antisense to RNF138 2.0000 0.0000
9 ENSG00000238835 SCARNA18 small Cajal body-specific RNA 18 1.8813 0.0000
10 ENSG00000258638 protein tyrosine phosphatase type IVA, member 1 (PTP4A1) pseudogene 1.8333 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000258130 coiled-coil domain containing 101 (CCDC101) pseudogene -2.1543 0.0000
63220 ENSG00000265768 MIR4506 microRNA 4506 -2.1543 0.0000
63219 ENSG00000185950 IRS2 insulin receptor substrate 2 -2.1541 0.0000
63218 ENSG00000177189 RPS6KA3 ribosomal protein S6 kinase A3 -2.1540 0.0000
63217 ENSG00000259385 novel transcript, antisense to CTXN2 -2.1533 0.0000
63216 ENSG00000125998 FAM83C family with sequence similarity 83 member C -2.1532 0.0000
63215 ENSG00000239199 RPL21P6 ribosomal protein L21 pseudogene 6 -2.1531 0.0000
63214 ENSG00000125861 GFRA4 GDNF family receptor alpha 4 -2.1530 0.0000
63213 ENSG00000205189 ZBTB10 zinc finger and BTB domain containing 10 -2.1528 0.0000
63212 ENSG00000233081 novel transcript -2.1518 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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