SHOGoiN Cell Methylome: GSM2773613

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773613


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M240Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204814 novel transcript 3.0000 0.0000
2 ENSG00000181023 OR56B1 olfactory receptor family 56 subfamily B member 1 2.4014 0.0000
3 ENSG00000219453 ferritin pseudogene 2.0000 0.0029
4 ENSG00000222623 RNU6-1100P RNA, U6 small nuclear 1100, pseudogene 2.0000 0.0029
5 ENSG00000241599 novel transcript 2.0000 0.0029
6 ENSG00000249259 rearranged L-myc fusion (RLF) pseudogene 2.0000 0.0000
7 ENSG00000253059 NA 2.0000 0.0000
8 ENSG00000263393 novel transcript, antisense to RNF138 2.0000 0.0000
9 ENSG00000238835 SCARNA18 small Cajal body-specific RNA 18 1.8813 0.0000
10 ENSG00000258638 protein tyrosine phosphatase type IVA, member 1 (PTP4A1) pseudogene 1.8333 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000267159 novel transcript, antisense to ARID3A -2.1910 0.0000
63340 ENSG00000025708 TYMP thymidine phosphorylase -2.1909 0.0000
63339 ENSG00000264745 TTC39C-AS1 TTC39C antisense RNA 1 -2.1907 0.0000
63338 ENSG00000205653 novel transcript -2.1902 0.0000
63337 ENSG00000232618 novel transcript -2.1901 0.0000
63336 ENSG00000266743 novel transcript -2.1900 0.0000
63335 ENSG00000178996 SNX18 sorting nexin 18 -2.1894 0.0000
63334 ENSG00000138675 FGF5 fibroblast growth factor 5 -2.1892 0.0000
63333 ENSG00000179930 ZNF648 zinc finger protein 648 -2.1892 0.0000
63332 ENSG00000205502 C2CD4B C2 calcium dependent domain containing 4B -2.1889 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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