Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773613

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773613


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M240Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204814 novel transcript 3.0000 0.0000
2 ENSG00000181023 OR56B1 olfactory receptor family 56 subfamily B member 1 2.4014 0.0000
3 ENSG00000219453 ferritin pseudogene 2.0000 0.0029
4 ENSG00000222623 RNU6-1100P RNA, U6 small nuclear 1100, pseudogene 2.0000 0.0029
5 ENSG00000241599 novel transcript 2.0000 0.0029
6 ENSG00000249259 rearranged L-myc fusion (RLF) pseudogene 2.0000 0.0000
7 ENSG00000253059 NA 2.0000 0.0000
8 ENSG00000263393 novel transcript, antisense to RNF138 2.0000 0.0000
9 ENSG00000238835 SCARNA18 small Cajal body-specific RNA 18 1.8813 0.0000
10 ENSG00000258638 protein tyrosine phosphatase type IVA, member 1 (PTP4A1) pseudogene 1.8333 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000279520 tec -2.1408 0.0000
63172 ENSG00000130449 ZSWIM6 zinc finger SWIM-type containing 6 -2.1408 0.0000
63171 ENSG00000253256 novel transcript -2.1403 0.0000
63170 ENSG00000242540 novel transcript -2.1400 0.0000
63169 ENSG00000256263 DDX11L8 DEAD/H-box helicase 11 like 8 (pseudogene) -2.1400 0.0000
63168 ENSG00000165449 SLC16A9 solute carrier family 16 member 9 -2.1397 0.0000
63167 ENSG00000253549 CA3-AS1 CA3 antisense RNA 1 -2.1395 0.0000
63166 ENSG00000279369 TEC -2.1390 0.0000
63165 ENSG00000117906 RCN2 reticulocalbin 2 -2.1389 0.0000
63164 ENSG00000278017 novel transcript, antisense to ZCCHC2 -2.1384 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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