Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773614

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773614


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M241Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257779 chromosome 6 open reading frame 35 (C6orf35) pseudogene 3.0000 0.0000
2 ENSG00000243297 RPL31P61 ribosomal protein L31 pseudogene 61 2.5850 0.0000
3 ENSG00000243548 RN7SL101P RNA, 7SL, cytoplasmic 101, pseudogene 2.5850 0.0000
4 ENSG00000222693 RN7SKP120 RN7SK pseudogene 120 2.4577 0.0000
5 ENSG00000222054 RNA5SP177 RNA, 5S ribosomal pseudogene 177 2.3219 0.0000
6 ENSG00000225923 secretory carrier membrane protein 1 (SCAMP1) pseudogene 2.3219 0.0000
7 ENSG00000233057 EEF1A1P14 eukaryotic translation elongation factor 1 alpha 1 pseudogene 14 2.3219 0.0000
8 ENSG00000235303 novel transcript 2.3219 0.0003
9 ENSG00000235334 BTG3P1 BTG anti-proliferation factor 3 pseudogene 1 2.3219 0.0003
10 ENSG00000236683 HMGA1P1 high mobility group AT-hook 1 pseudogene 1 2.3219 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000229848 novel transcript, antisense to ACTG1 -2.1160 0.0000
63127 ENSG00000141040 ZNF287 zinc finger protein 287 -2.1155 0.0000
63126 ENSG00000223719 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide (YWHAQ) pseudogene -2.1153 0.0275
63125 ENSG00000241464 RPL39P38 ribosomal protein L39 pseudogene 38 -2.1153 0.0000
63124 ENSG00000235163 ribosomal protein L7a (RPL7A) pseudogene -2.1153 0.0631
63123 ENSG00000147180 ZNF711 zinc finger protein 711 -2.1152 0.0000
63122 ENSG00000179673 RPRML reprimo like -2.1144 0.0000
63121 ENSG00000163577 EIF5A2 eukaryotic translation initiation factor 5A2 -2.1142 0.0000
63120 ENSG00000229401 MIR5689HG MIR5689 host gene -2.1141 0.0000
63119 ENSG00000183674 LINC00518 long intergenic non-protein coding RNA 518 -2.1141 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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