SHOGoiN Cell Methylome: GSM2773614
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773614 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M241 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000257779 | chromosome 6 open reading frame 35 (C6orf35) pseudogene | 3.0000 | 0.0000 | |
| 2 | ENSG00000243297 | RPL31P61 | ribosomal protein L31 pseudogene 61 | 2.5850 | 0.0000 |
| 3 | ENSG00000243548 | RN7SL101P | RNA, 7SL, cytoplasmic 101, pseudogene | 2.5850 | 0.0000 |
| 4 | ENSG00000222693 | RN7SKP120 | RN7SK pseudogene 120 | 2.4577 | 0.0000 |
| 5 | ENSG00000222054 | RNA5SP177 | RNA, 5S ribosomal pseudogene 177 | 2.3219 | 0.0000 |
| 6 | ENSG00000225923 | secretory carrier membrane protein 1 (SCAMP1) pseudogene | 2.3219 | 0.0000 | |
| 7 | ENSG00000233057 | EEF1A1P14 | eukaryotic translation elongation factor 1 alpha 1 pseudogene 14 | 2.3219 | 0.0000 |
| 8 | ENSG00000235303 | novel transcript | 2.3219 | 0.0003 | |
| 9 | ENSG00000235334 | BTG3P1 | BTG anti-proliferation factor 3 pseudogene 1 | 2.3219 | 0.0003 |
| 10 | ENSG00000236683 | HMGA1P1 | high mobility group AT-hook 1 pseudogene 1 | 2.3219 | 0.0003 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000259361 | LINC00927 | long intergenic non-protein coding RNA 927 | -2.1788 | 0.0000 |
| 63340 | ENSG00000165644 | COMTD1 | catechol-O-methyltransferase domain containing 1 | -2.1783 | 0.0000 |
| 63339 | ENSG00000272836 | novel transcript, antisense to SELO | -2.1782 | 0.0000 | |
| 63338 | ENSG00000102531 | FNDC3A | fibronectin type III domain containing 3A | -2.1775 | 0.0000 |
| 63337 | ENSG00000225264 | ZNRF2P2 | zinc and ring finger 2 pseudogene 2 | -2.1763 | 0.0000 |
| 63336 | ENSG00000262358 | Novel protein, antisense to ITGAE | -2.1762 | 0.0000 | |
| 63335 | ENSG00000205364 | MT1M | metallothionein 1M | -2.1762 | 0.0000 |
| 63334 | ENSG00000203877 | RIPPLY2 | ripply transcriptional repressor 2 | -2.1751 | 0.0000 |
| 63333 | ENSG00000238026 | transmembrane protein 38B (TMEM38B) pseudogene | -2.1749 | 0.0014 | |
| 63332 | ENSG00000163273 | NPPC | natriuretic peptide C | -2.1748 | 0.0000 |
