Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773614
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773614
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M241
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000257779
chromosome 6 open reading frame 35 (C6orf35) pseudogene
3.0000
0.0000
2
ENSG00000243297
RPL31P61
ribosomal protein L31 pseudogene 61
2.5850
0.0000
3
ENSG00000243548
RN7SL101P
RNA, 7SL, cytoplasmic 101, pseudogene
2.5850
0.0000
4
ENSG00000222693
RN7SKP120
RN7SK pseudogene 120
2.4577
0.0000
5
ENSG00000222054
RNA5SP177
RNA, 5S ribosomal pseudogene 177
2.3219
0.0000
6
ENSG00000225923
secretory carrier membrane protein 1 (SCAMP1) pseudogene
2.3219
0.0000
7
ENSG00000233057
EEF1A1P14
eukaryotic translation elongation factor 1 alpha 1 pseudogene 14
2.3219
0.0000
8
ENSG00000235303
novel transcript
2.3219
0.0003
9
ENSG00000235334
BTG3P1
BTG anti-proliferation factor 3 pseudogene 1
2.3219
0.0003
10
ENSG00000236683
HMGA1P1
high mobility group AT-hook 1 pseudogene 1
2.3219
0.0003
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000229848
novel transcript, antisense to ACTG1
-2.1160
0.0000
63127
ENSG00000141040
ZNF287
zinc finger protein 287
-2.1155
0.0000
63126
ENSG00000223719
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide (YWHAQ) pseudogene
-2.1153
0.0275
63125
ENSG00000241464
RPL39P38
ribosomal protein L39 pseudogene 38
-2.1153
0.0000
63124
ENSG00000235163
ribosomal protein L7a (RPL7A) pseudogene
-2.1153
0.0631
63123
ENSG00000147180
ZNF711
zinc finger protein 711
-2.1152
0.0000
63122
ENSG00000179673
RPRML
reprimo like
-2.1144
0.0000
63121
ENSG00000163577
EIF5A2
eukaryotic translation initiation factor 5A2
-2.1142
0.0000
63120
ENSG00000229401
MIR5689HG
MIR5689 host gene
-2.1141
0.0000
63119
ENSG00000183674
LINC00518
long intergenic non-protein coding RNA 518
-2.1141
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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