SHOGoiN Cell Methylome: GSM2773614

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773614


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M241Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257779 chromosome 6 open reading frame 35 (C6orf35) pseudogene 3.0000 0.0000
2 ENSG00000243297 RPL31P61 ribosomal protein L31 pseudogene 61 2.5850 0.0000
3 ENSG00000243548 RN7SL101P RNA, 7SL, cytoplasmic 101, pseudogene 2.5850 0.0000
4 ENSG00000222693 RN7SKP120 RN7SK pseudogene 120 2.4577 0.0000
5 ENSG00000222054 RNA5SP177 RNA, 5S ribosomal pseudogene 177 2.3219 0.0000
6 ENSG00000225923 secretory carrier membrane protein 1 (SCAMP1) pseudogene 2.3219 0.0000
7 ENSG00000233057 EEF1A1P14 eukaryotic translation elongation factor 1 alpha 1 pseudogene 14 2.3219 0.0000
8 ENSG00000235303 novel transcript 2.3219 0.0003
9 ENSG00000235334 BTG3P1 BTG anti-proliferation factor 3 pseudogene 1 2.3219 0.0003
10 ENSG00000236683 HMGA1P1 high mobility group AT-hook 1 pseudogene 1 2.3219 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000259361 LINC00927 long intergenic non-protein coding RNA 927 -2.1788 0.0000
63340 ENSG00000165644 COMTD1 catechol-O-methyltransferase domain containing 1 -2.1783 0.0000
63339 ENSG00000272836 novel transcript, antisense to SELO -2.1782 0.0000
63338 ENSG00000102531 FNDC3A fibronectin type III domain containing 3A -2.1775 0.0000
63337 ENSG00000225264 ZNRF2P2 zinc and ring finger 2 pseudogene 2 -2.1763 0.0000
63336 ENSG00000262358 Novel protein, antisense to ITGAE -2.1762 0.0000
63335 ENSG00000205364 MT1M metallothionein 1M -2.1762 0.0000
63334 ENSG00000203877 RIPPLY2 ripply transcriptional repressor 2 -2.1751 0.0000
63333 ENSG00000238026 transmembrane protein 38B (TMEM38B) pseudogene -2.1749 0.0014
63332 ENSG00000163273 NPPC natriuretic peptide C -2.1748 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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