Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773615

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773615


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M242Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248148 novel transcript 2.3219 0.0000
2 ENSG00000264090 MIR4666B microRNA 4666b 2.3219 0.0000
3 ENSG00000282993 TEC 2.3219 0.0003
4 ENSG00000221650 MIR1267 microRNA 1267 2.0000 0.0021
5 ENSG00000223770 CACNA2D1-AS1 CACNA2D1 antisense RNA 1 2.0000 0.0000
6 ENSG00000251593 MSNP1 moesin pseudogene 1 2.0000 0.0021
7 ENSG00000257855 p53 and DNA-damage regulated 1 (PDRG1) pseudogene 1.7331 0.0000
8 ENSG00000181009 OR52N5 olfactory receptor family 52 subfamily N member 5 1.5850 0.0003
9 ENSG00000207269 RN7SKP62 RN7SK pseudogene 62 1.5850 0.0166
10 ENSG00000218351 RPS3AP23 RPS3A pseudogene 23 1.5850 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000168267 PTF1A pancreas associated transcription factor 1a -1.9014 0.0000
63127 ENSG00000113384 GOLPH3 golgi phosphoprotein 3 -1.9013 0.0000
63126 ENSG00000128266 GNAZ G protein subunit alpha z -1.9010 0.0000
63125 ENSG00000261779 novel protein, antisense to C15orf39 -1.9010 0.0000
63124 ENSG00000136099 PCDH8 protocadherin 8 -1.9009 0.0000
63123 ENSG00000264655 PPIAP54 peptidylprolyl isomerase A pseudogene 54 -1.9008 0.0000
63122 ENSG00000105472 CLEC11A C-type lectin domain containing 11A -1.9006 0.0000
63121 ENSG00000088448 ANKRD10 ankyrin repeat domain 10 -1.9002 0.0000
63120 ENSG00000090097 PCBP4 poly(rC) binding protein 4 -1.9002 0.0000
63119 ENSG00000131979 GCH1 GTP cyclohydrolase 1 -1.8995 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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