SHOGoiN Cell Methylome: GSM2773615

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773615


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M242Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248148 novel transcript 2.3219 0.0000
2 ENSG00000264090 MIR4666B microRNA 4666b 2.3219 0.0000
3 ENSG00000282993 TEC 2.3219 0.0003
4 ENSG00000221650 MIR1267 microRNA 1267 2.0000 0.0021
5 ENSG00000223770 novel transcript 2.0000 0.0000
6 ENSG00000251593 MSNP1 moesin pseudogene 1 2.0000 0.0021
7 ENSG00000257855 p53 and DNA-damage regulated 1 (PDRG1) pseudogene 1.7331 0.0000
8 ENSG00000181009 OR52N5 olfactory receptor family 52 subfamily N member 5 1.5850 0.0003
9 ENSG00000207269 RN7SKP62 RN7SK pseudogene 62 1.5850 0.0166
10 ENSG00000218351 RPS3AP23 ribosomal protein S3a pseudogene 23 1.5850 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000255239 TREHP1 trehalase pseudogene 1 -1.9586 0.0000
63340 ENSG00000152779 SLC16A12 solute carrier family 16 member 12 -1.9584 0.0000
63339 ENSG00000279444 TEC -1.9580 0.0000
63338 ENSG00000284536 MIR17 microRNA 17 -1.9568 0.0000
63337 ENSG00000284375 MIR19B1 microRNA 19b-1 -1.9568 0.0000
63336 ENSG00000284204 MIR19A microRNA 19a -1.9568 0.0000
63335 ENSG00000283815 MIR18A microRNA 18a -1.9568 0.0000
63334 ENSG00000283762 MIR20A microRNA 20a -1.9568 0.0000
63333 ENSG00000283705 MIR92A1 microRNA 92a-1 -1.9568 0.0000
63332 ENSG00000265222 novel transcript, sense intronic MYO1D -1.9566 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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