Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773616

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773616


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M243Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
2 ENSG00000243025 MTAPP1 methylthioadenosine phosphorylase pseudogene 1 2.0000 0.0024
3 ENSG00000252864 RNA5SP278 RNA, 5S ribosomal pseudogene 278 2.0000 0.0000
4 ENSG00000212259 RNU6-308P RNA, U6 small nuclear 308, pseudogene 1.8617 0.0000
5 ENSG00000259032 ENSAP2 endosulfine alpha pseudogene 2 1.8000 0.0000
6 ENSG00000226414 MTCYBP38 MT-CYB pseudogene 38 1.7890 0.0000
7 ENSG00000279698 TEC 1.6667 0.0000
8 ENSG00000265425 novel transcript 1.6610 0.0000
9 ENSG00000231822 SMC3P1 SMC3 pseudogene 1 1.6462 0.0000
10 ENSG00000243122 ribosomal protein S15 (RPS15) pseudogene 1.5975 0.0000
63119 ENSG00000169418 NPR1 natriuretic peptide receptor 1 -1.8484 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000163866 SMIM12 small integral membrane protein 12 -1.8509 0.0000
63127 ENSG00000238578 SNORD4A small nucleolar RNA, C/D box 4A -1.8503 0.0000
63126 ENSG00000130054 FAM155B family with sequence similarity 155 member B -1.8502 0.0000
63125 ENSG00000273355 novel transcript -1.8501 0.0000
63124 ENSG00000116396 KCNC4 potassium voltage-gated channel subfamily C member 4 -1.8501 0.0000
63123 ENSG00000264577 novel transcript, antisense to RPL23A -1.8497 0.0000
63122 ENSG00000271659 novel transcript, antisense to PTCH1 -1.8497 0.0000
63121 ENSG00000106771 TMEM245 transmembrane protein 245 -1.8496 0.0000
63120 ENSG00000238358 novel transcript -1.8487 0.0000
63119 ENSG00000169418 NPR1 natriuretic peptide receptor 1 -1.8484 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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