Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773616

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773616 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M243	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
2	ENSG00000243025	MTAPP1	methylthioadenosine phosphorylase pseudogene 1	2.0000	0.0024
3	ENSG00000252864	RNA5SP278	RNA, 5S ribosomal pseudogene 278	2.0000	0.0000
4	ENSG00000212259	RNU6-308P	RNA, U6 small nuclear 308, pseudogene	1.8617	0.0000
5	ENSG00000259032	ENSAP2	endosulfine alpha pseudogene 2	1.8000	0.0000
6	ENSG00000226414	MTCYBP38	MT-CYB pseudogene 38	1.7890	0.0000
7	ENSG00000279698		TEC	1.6667	0.0000
8	ENSG00000265425		novel transcript	1.6610	0.0000
9	ENSG00000231822	SMC3P1	SMC3 pseudogene 1	1.6462	0.0000
10	ENSG00000243122		ribosomal protein S15 (RPS15) pseudogene	1.5975	0.0000
63119	ENSG00000169418	NPR1	natriuretic peptide receptor 1	-1.8484	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000163866	SMIM12	small integral membrane protein 12	-1.8509	0.0000
63127	ENSG00000238578	SNORD4A	small nucleolar RNA, C/D box 4A	-1.8503	0.0000
63126	ENSG00000130054	FAM155B	family with sequence similarity 155 member B	-1.8502	0.0000
63125	ENSG00000273355		novel transcript	-1.8501	0.0000
63124	ENSG00000116396	KCNC4	potassium voltage-gated channel subfamily C member 4	-1.8501	0.0000
63123	ENSG00000264577		novel transcript, antisense to RPL23A	-1.8497	0.0000
63122	ENSG00000271659		novel transcript, antisense to PTCH1	-1.8497	0.0000
63121	ENSG00000106771	TMEM245	transmembrane protein 245	-1.8496	0.0000
63120	ENSG00000238358		novel transcript	-1.8487	0.0000
63119	ENSG00000169418	NPR1	natriuretic peptide receptor 1	-1.8484	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

Now loading...