SHOGoiN Cell Methylome: GSM2773616
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773616 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M243 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 2 | ENSG00000243025 | MTAPP1 | methylthioadenosine phosphorylase pseudogene 1 | 2.0000 | 0.0024 |
| 3 | ENSG00000252864 | RNA5SP278 | RNA, 5S ribosomal pseudogene 278 | 2.0000 | 0.0000 |
| 4 | ENSG00000212259 | RNU6-308P | RNA, U6 small nuclear 308, pseudogene | 1.8617 | 0.0000 |
| 5 | ENSG00000259032 | ENSAP2 | endosulfine alpha pseudogene 2 | 1.8000 | 0.0000 |
| 6 | ENSG00000226414 | MTCYBP38 | MT-CYB pseudogene 38 | 1.7890 | 0.0000 |
| 7 | ENSG00000279698 | TEC | 1.6667 | 0.0000 | |
| 8 | ENSG00000265425 | novel transcript | 1.6610 | 0.0000 | |
| 9 | ENSG00000231822 | structural maintenance of chromosomes 3 (SMC3) pseudogene | 1.6462 | 0.0000 | |
| 10 | ENSG00000243122 | ribosomal protein S15 (RPS15) pseudogene | 1.5975 | 0.0000 | |
| 63332 | ENSG00000178163 | ZNF518B | zinc finger protein 518B | -1.9002 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000203727 | SAMD5 | sterile alpha motif domain containing 5 | -1.9040 | 0.0000 |
| 63340 | ENSG00000279725 | TEC | -1.9035 | 0.0000 | |
| 63339 | ENSG00000267414 | uncharacterized LOC101927943 | -1.9028 | 0.0000 | |
| 63338 | ENSG00000156427 | FGF18 | fibroblast growth factor 18 | -1.9025 | 0.0000 |
| 63337 | ENSG00000188778 | ADRB3 | adrenoceptor beta 3 | -1.9022 | 0.0000 |
| 63336 | ENSG00000231918 | novel transcript | -1.9018 | 0.0000 | |
| 63335 | ENSG00000233451 | novel transcript, sense overlapping SPAG6 | -1.9008 | 0.0984 | |
| 63334 | ENSG00000166573 | GALR1 | galanin receptor 1 | -1.9008 | 0.0000 |
| 63333 | ENSG00000277693 | novel transcript | -1.9007 | 0.0000 | |
| 63332 | ENSG00000178163 | ZNF518B | zinc finger protein 518B | -1.9002 | 0.0000 |
