Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773616
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773616
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M243
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
2
ENSG00000243025
MTAPP1
methylthioadenosine phosphorylase pseudogene 1
2.0000
0.0024
3
ENSG00000252864
RNA5SP278
RNA, 5S ribosomal pseudogene 278
2.0000
0.0000
4
ENSG00000212259
RNU6-308P
RNA, U6 small nuclear 308, pseudogene
1.8617
0.0000
5
ENSG00000259032
ENSAP2
endosulfine alpha pseudogene 2
1.8000
0.0000
6
ENSG00000226414
MTCYBP38
MT-CYB pseudogene 38
1.7890
0.0000
7
ENSG00000279698
TEC
1.6667
0.0000
8
ENSG00000265425
novel transcript
1.6610
0.0000
9
ENSG00000231822
SMC3P1
SMC3 pseudogene 1
1.6462
0.0000
10
ENSG00000243122
ribosomal protein S15 (RPS15) pseudogene
1.5975
0.0000
63119
ENSG00000169418
NPR1
natriuretic peptide receptor 1
-1.8484
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000163866
SMIM12
small integral membrane protein 12
-1.8509
0.0000
63127
ENSG00000238578
SNORD4A
small nucleolar RNA, C/D box 4A
-1.8503
0.0000
63126
ENSG00000130054
FAM155B
family with sequence similarity 155 member B
-1.8502
0.0000
63125
ENSG00000273355
novel transcript
-1.8501
0.0000
63124
ENSG00000116396
KCNC4
potassium voltage-gated channel subfamily C member 4
-1.8501
0.0000
63123
ENSG00000264577
novel transcript, antisense to RPL23A
-1.8497
0.0000
63122
ENSG00000271659
novel transcript, antisense to PTCH1
-1.8497
0.0000
63121
ENSG00000106771
TMEM245
transmembrane protein 245
-1.8496
0.0000
63120
ENSG00000238358
novel transcript
-1.8487
0.0000
63119
ENSG00000169418
NPR1
natriuretic peptide receptor 1
-1.8484
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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