Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773617

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773617 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M244	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000207225	RNU6-692P	RNA, U6 small nuclear 692, pseudogene	2.3219	0.0003
2	ENSG00000221214	MIR548E	microRNA 548e	2.3219	0.0003
3	ENSG00000263561	MIR4704	microRNA 4704	2.3219	0.0003
4	ENSG00000279595		TEC	2.2925	0.0000
5	ENSG00000233316	DSCR10	Down syndrome critical region 10	2.0458	0.0000
6	ENSG00000237484	LINC01684	long intergenic non-protein coding RNA 1684	2.0000	0.0025
7	ENSG00000258496		novel transcript	2.0000	0.0000
8	ENSG00000269833		novel zinc finger protein pseudogene	2.0000	0.0025
9	ENSG00000231300	EZH2P1	enhancer of zeste 2 polycomb repressive complex 2 subunit pseudogene 1	1.8813	0.0000
10	ENSG00000270835		CTAGE family, member 5 (CTAGE5) pseudogene	1.8617	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000069275	NUCKS1	nuclear casein kinase and cyclin dependent kinase substrate 1	-1.8848	0.0000
63127	ENSG00000234322	ST13P18	ST13, Hsp70 interacting protein pseudogene 18	-1.8847	0.0113
63126	ENSG00000265653	MIR548AK	microRNA 548ak	-1.8847	0.0000
63125	ENSG00000128310	GALR3	galanin receptor 3	-1.8845	0.0000
63124	ENSG00000088538	DOCK3	dedicator of cytokinesis 3	-1.8845	0.0000
63123	ENSG00000253502	ATP6V1G1P2	ATPase H+ transporting V1 subunit G1 pseudogene 2	-1.8845	0.0000
63122	ENSG00000231622	RPS29P7	ribosomal protein S29 pseudogene 7	-1.8843	0.0000
63121	ENSG00000261314		novel transcript, sense overlapping SLC30A1	-1.8843	0.0000
63120	ENSG00000164125	GASK1B	golgi associated kinase 1B	-1.8841	0.0000
63119	ENSG00000172995	ARPP21	cAMP regulated phosphoprotein 21	-1.8836	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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