SHOGoiN Cell Methylome: GSM2773617

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773617


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M244Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207225 RNU6-692P RNA, U6 small nuclear 692, pseudogene 2.3219 0.0003
2 ENSG00000221214 MIR548E microRNA 548e 2.3219 0.0003
3 ENSG00000263561 MIR4704 microRNA 4704 2.3219 0.0003
4 ENSG00000279595 TEC 2.2925 0.0000
5 ENSG00000233316 DSCR10 Down syndrome critical region 10 2.0458 0.0000
6 ENSG00000237484 LINC01684 long intergenic non-protein coding RNA 1684 2.0000 0.0025
7 ENSG00000258496 novel transcript 2.0000 0.0000
8 ENSG00000269833 novel zinc finger protein pseudogene 2.0000 0.0025
9 ENSG00000231300 EZH2P1 enhancer of zeste 2 polycomb repressive complex 2 subunit pseudogene 1 1.8813 0.0000
10 ENSG00000270835 CTAGE family, member 5 (CTAGE5) pseudogene 1.8617 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000251324 LINC01386 long intergenic non-protein coding RNA 1386 -1.9482 0.0003
63340 ENSG00000174891 RSRC1 arginine and serine rich coiled-coil 1 -1.9480 0.0000
63339 ENSG00000171823 FBXL14 F-box and leucine rich repeat protein 14 -1.9473 0.0000
63338 ENSG00000108179 PPIF peptidylprolyl isomerase F -1.9469 0.0000
63337 ENSG00000278012 novel transcript, sense intronic to XKR7 -1.9468 0.0000
63336 ENSG00000203593 novel transcript -1.9467 0.0000
63335 ENSG00000272884 novel transcript -1.9465 0.0000
63334 ENSG00000165410 CFL2 cofilin 2 -1.9448 0.0000
63333 ENSG00000273391 novel transcript, antisense to LUC7L2 -1.9440 0.0000
63332 ENSG00000269926 DDIT4-AS1 DDIT4 antisense RNA 1 -1.9432 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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