Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773617

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773617


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M244Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207225 RNU6-692P RNA, U6 small nuclear 692, pseudogene 2.3219 0.0003
2 ENSG00000221214 MIR548E microRNA 548e 2.3219 0.0003
3 ENSG00000263561 MIR4704 microRNA 4704 2.3219 0.0003
4 ENSG00000279595 TEC 2.2925 0.0000
5 ENSG00000233316 DSCR10 Down syndrome critical region 10 2.0458 0.0000
6 ENSG00000237484 LINC01684 long intergenic non-protein coding RNA 1684 2.0000 0.0025
7 ENSG00000258496 novel transcript 2.0000 0.0000
8 ENSG00000269833 novel zinc finger protein pseudogene 2.0000 0.0025
9 ENSG00000231300 EZH2P1 enhancer of zeste 2 polycomb repressive complex 2 subunit pseudogene 1 1.8813 0.0000
10 ENSG00000270835 CTAGE family, member 5 (CTAGE5) pseudogene 1.8617 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000069275 NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 -1.8848 0.0000
63127 ENSG00000234322 ST13P18 ST13, Hsp70 interacting protein pseudogene 18 -1.8847 0.0113
63126 ENSG00000265653 MIR548AK microRNA 548ak -1.8847 0.0000
63125 ENSG00000128310 GALR3 galanin receptor 3 -1.8845 0.0000
63124 ENSG00000088538 DOCK3 dedicator of cytokinesis 3 -1.8845 0.0000
63123 ENSG00000253502 ATP6V1G1P2 ATPase H+ transporting V1 subunit G1 pseudogene 2 -1.8845 0.0000
63122 ENSG00000231622 RPS29P7 ribosomal protein S29 pseudogene 7 -1.8843 0.0000
63121 ENSG00000261314 novel transcript, sense overlapping SLC30A1 -1.8843 0.0000
63120 ENSG00000164125 GASK1B golgi associated kinase 1B -1.8841 0.0000
63119 ENSG00000172995 ARPP21 cAMP regulated phosphoprotein 21 -1.8836 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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