Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773617
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773617
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M244
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000207225
RNU6-692P
RNA, U6 small nuclear 692, pseudogene
2.3219
0.0003
2
ENSG00000221214
MIR548E
microRNA 548e
2.3219
0.0003
3
ENSG00000263561
MIR4704
microRNA 4704
2.3219
0.0003
4
ENSG00000279595
TEC
2.2925
0.0000
5
ENSG00000233316
DSCR10
Down syndrome critical region 10
2.0458
0.0000
6
ENSG00000237484
LINC01684
long intergenic non-protein coding RNA 1684
2.0000
0.0025
7
ENSG00000258496
novel transcript
2.0000
0.0000
8
ENSG00000269833
novel zinc finger protein pseudogene
2.0000
0.0025
9
ENSG00000231300
EZH2P1
enhancer of zeste 2 polycomb repressive complex 2 subunit pseudogene 1
1.8813
0.0000
10
ENSG00000270835
CTAGE family, member 5 (CTAGE5) pseudogene
1.8617
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000069275
NUCKS1
nuclear casein kinase and cyclin dependent kinase substrate 1
-1.8848
0.0000
63127
ENSG00000234322
ST13P18
ST13, Hsp70 interacting protein pseudogene 18
-1.8847
0.0113
63126
ENSG00000265653
MIR548AK
microRNA 548ak
-1.8847
0.0000
63125
ENSG00000128310
GALR3
galanin receptor 3
-1.8845
0.0000
63124
ENSG00000088538
DOCK3
dedicator of cytokinesis 3
-1.8845
0.0000
63123
ENSG00000253502
ATP6V1G1P2
ATPase H+ transporting V1 subunit G1 pseudogene 2
-1.8845
0.0000
63122
ENSG00000231622
RPS29P7
ribosomal protein S29 pseudogene 7
-1.8843
0.0000
63121
ENSG00000261314
novel transcript, sense overlapping SLC30A1
-1.8843
0.0000
63120
ENSG00000164125
GASK1B
golgi associated kinase 1B
-1.8841
0.0000
63119
ENSG00000172995
ARPP21
cAMP regulated phosphoprotein 21
-1.8836
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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