SHOGoiN Cell Methylome: GSM2773617
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773617 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M244 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000207225 | RNU6-692P | RNA, U6 small nuclear 692, pseudogene | 2.3219 | 0.0003 |
| 2 | ENSG00000221214 | MIR548E | microRNA 548e | 2.3219 | 0.0003 |
| 3 | ENSG00000263561 | MIR4704 | microRNA 4704 | 2.3219 | 0.0003 |
| 4 | ENSG00000279595 | TEC | 2.2925 | 0.0000 | |
| 5 | ENSG00000233316 | DSCR10 | Down syndrome critical region 10 | 2.0458 | 0.0000 |
| 6 | ENSG00000237484 | LINC01684 | long intergenic non-protein coding RNA 1684 | 2.0000 | 0.0025 |
| 7 | ENSG00000258496 | novel transcript | 2.0000 | 0.0000 | |
| 8 | ENSG00000269833 | novel zinc finger protein pseudogene | 2.0000 | 0.0025 | |
| 9 | ENSG00000231300 | EZH2P1 | enhancer of zeste 2 polycomb repressive complex 2 subunit pseudogene 1 | 1.8813 | 0.0000 |
| 10 | ENSG00000270835 | CTAGE family, member 5 (CTAGE5) pseudogene | 1.8617 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000251324 | LINC01386 | long intergenic non-protein coding RNA 1386 | -1.9482 | 0.0003 |
| 63340 | ENSG00000174891 | RSRC1 | arginine and serine rich coiled-coil 1 | -1.9480 | 0.0000 |
| 63339 | ENSG00000171823 | FBXL14 | F-box and leucine rich repeat protein 14 | -1.9473 | 0.0000 |
| 63338 | ENSG00000108179 | PPIF | peptidylprolyl isomerase F | -1.9469 | 0.0000 |
| 63337 | ENSG00000278012 | novel transcript, sense intronic to XKR7 | -1.9468 | 0.0000 | |
| 63336 | ENSG00000203593 | novel transcript | -1.9467 | 0.0000 | |
| 63335 | ENSG00000272884 | novel transcript | -1.9465 | 0.0000 | |
| 63334 | ENSG00000165410 | CFL2 | cofilin 2 | -1.9448 | 0.0000 |
| 63333 | ENSG00000273391 | novel transcript, antisense to LUC7L2 | -1.9440 | 0.0000 | |
| 63332 | ENSG00000269926 | DDIT4-AS1 | DDIT4 antisense RNA 1 | -1.9432 | 0.0000 |
