SHOGoiN Cell Methylome: GSM2773618
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773618 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M245 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000271356 | ubiquitin specific peptidase 21 (USP21) pseudogene | 3.3219 | 0.0000 | |
| 2 | ENSG00000243871 | RN7SL487P | RNA, 7SL, cytoplasmic 487, pseudogene | 3.1699 | 0.0000 |
| 3 | ENSG00000259433 | protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) (PRKRIR) pseudogene | 3.0000 | 0.0000 | |
| 4 | ENSG00000235748 | SEPT14P12 | septin 14 pseudogene 12 | 2.8074 | 0.0000 |
| 5 | ENSG00000238680 | RNU6-1037P | RNA, U6 small nuclear 1037, pseudogene | 2.8074 | 0.0000 |
| 6 | ENSG00000253584 | novel transcript | 2.8074 | 0.0000 | |
| 7 | ENSG00000258930 | tetratricopeptide repeat domain 7B (TTC7B) pseudogene | 2.8074 | 0.0000 | |
| 8 | ENSG00000057468 | MSH4 | mutS homolog 4 | 2.7332 | 0.0000 |
| 9 | ENSG00000254465 | THAP12P4 | THAP domain containing 12 pseudogene 4 | 2.6458 | 0.0000 |
| 10 | ENSG00000200369 | RNU6-666P | RNA, U6 small nuclear 666, pseudogene | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000255680 | novel transcript | -2.4353 | 0.0000 | |
| 63340 | ENSG00000198205 | ZXDA | zinc finger X-linked duplicated A | -2.4351 | 0.0000 |
| 63339 | ENSG00000182674 | KCNB2 | potassium voltage-gated channel subfamily B member 2 | -2.4346 | 0.0000 |
| 63338 | ENSG00000277881 | YTH domain family, member 1 (YTHDF1) pseudogene | -2.4346 | 0.0000 | |
| 63337 | ENSG00000223506 | SLC20A1P1 | solute carrier family 20 member 1 pseudogene 1 | -2.4345 | 0.0009 |
| 63336 | ENSG00000100439 | ABHD4 | abhydrolase domain containing 4 | -2.4332 | 0.0000 |
| 63335 | ENSG00000280433 | novel protein, similar to trafficking protein particle complex 10 TRAPPC10 | -2.4326 | 0.0000 | |
| 63334 | ENSG00000267642 | novel transcript | -2.4321 | 0.0001 | |
| 63333 | ENSG00000233508 | novel transcript | -2.4318 | 0.0000 | |
| 63332 | ENSG00000117036 | ETV3 | ETS variant 3 | -2.4314 | 0.0000 |
