Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773618

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773618


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M245Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000271356 USP21P2 USP21 pseudogene 2 3.3219 0.0000
2 ENSG00000243871 RN7SL487P RNA, 7SL, cytoplasmic 487, pseudogene 3.1699 0.0000
3 ENSG00000259433 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) (PRKRIR) pseudogene 3.0000 0.0000
4 ENSG00000235748 SEPTIN14P12 septin 14 pseudogene 12 2.8074 0.0000
5 ENSG00000238680 RNU6-1037P RNA, U6 small nuclear 1037, pseudogene 2.8074 0.0000
6 ENSG00000253584 novel transcript 2.8074 0.0000
7 ENSG00000258930 tetratricopeptide repeat domain 7B (TTC7B) pseudogene 2.8074 0.0000
8 ENSG00000057468 MSH4 mutS homolog 4 2.7332 0.0000
9 ENSG00000254465 THAP12P4 THAP domain containing 12 pseudogene 4 2.6458 0.0000
10 ENSG00000200369 RNU6-666P RNA, U6 small nuclear 666, pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000213543 RARRES2P2 retinoic acid receptor responder 2 pseudogene 2 -2.3440 0.0010
63127 ENSG00000224382 LINC00703 long intergenic non-protein coding RNA 703 -2.3433 0.0022
63126 ENSG00000143315 PIGM phosphatidylinositol glycan anchor biosynthesis class M -2.3432 0.0000
63125 ENSG00000228917 NECTIN4-AS1 NECTIN4 antisense RNA 1 -2.3431 0.0000
63124 ENSG00000261693 novel transcript, antisense to TSNARE1 -2.3430 0.0000
63123 ENSG00000259985 novel transcript, antisense to B4GALT6 -2.3424 0.0000
63122 ENSG00000223138 RNA5SP450 RNA, 5S ribosomal pseudogene 450 -2.3418 0.0000
63121 ENSG00000257663 novel transcript, antisense to C12orf44 -2.3416 0.0000
63120 ENSG00000180346 TIGD2 tigger transposable element derived 2 -2.3409 0.0002
63119 ENSG00000186564 FOXD2 forkhead box D2 -2.3406 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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