Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773618
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773618
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M245
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000271356
USP21P2
USP21 pseudogene 2
3.3219
0.0000
2
ENSG00000243871
RN7SL487P
RNA, 7SL, cytoplasmic 487, pseudogene
3.1699
0.0000
3
ENSG00000259433
protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) (PRKRIR) pseudogene
3.0000
0.0000
4
ENSG00000235748
SEPTIN14P12
septin 14 pseudogene 12
2.8074
0.0000
5
ENSG00000238680
RNU6-1037P
RNA, U6 small nuclear 1037, pseudogene
2.8074
0.0000
6
ENSG00000253584
novel transcript
2.8074
0.0000
7
ENSG00000258930
tetratricopeptide repeat domain 7B (TTC7B) pseudogene
2.8074
0.0000
8
ENSG00000057468
MSH4
mutS homolog 4
2.7332
0.0000
9
ENSG00000254465
THAP12P4
THAP domain containing 12 pseudogene 4
2.6458
0.0000
10
ENSG00000200369
RNU6-666P
RNA, U6 small nuclear 666, pseudogene
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000213543
RARRES2P2
retinoic acid receptor responder 2 pseudogene 2
-2.3440
0.0010
63127
ENSG00000224382
LINC00703
long intergenic non-protein coding RNA 703
-2.3433
0.0022
63126
ENSG00000143315
PIGM
phosphatidylinositol glycan anchor biosynthesis class M
-2.3432
0.0000
63125
ENSG00000228917
NECTIN4-AS1
NECTIN4 antisense RNA 1
-2.3431
0.0000
63124
ENSG00000261693
novel transcript, antisense to TSNARE1
-2.3430
0.0000
63123
ENSG00000259985
novel transcript, antisense to B4GALT6
-2.3424
0.0000
63122
ENSG00000223138
RNA5SP450
RNA, 5S ribosomal pseudogene 450
-2.3418
0.0000
63121
ENSG00000257663
novel transcript, antisense to C12orf44
-2.3416
0.0000
63120
ENSG00000180346
TIGD2
tigger transposable element derived 2
-2.3409
0.0002
63119
ENSG00000186564
FOXD2
forkhead box D2
-2.3406
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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