Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773618

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773618 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M245	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000271356	USP21P2	USP21 pseudogene 2	3.3219	0.0000
2	ENSG00000243871	RN7SL487P	RNA, 7SL, cytoplasmic 487, pseudogene	3.1699	0.0000
3	ENSG00000259433		protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) (PRKRIR) pseudogene	3.0000	0.0000
4	ENSG00000235748	SEPTIN14P12	septin 14 pseudogene 12	2.8074	0.0000
5	ENSG00000238680	RNU6-1037P	RNA, U6 small nuclear 1037, pseudogene	2.8074	0.0000
6	ENSG00000253584		novel transcript	2.8074	0.0000
7	ENSG00000258930		tetratricopeptide repeat domain 7B (TTC7B) pseudogene	2.8074	0.0000
8	ENSG00000057468	MSH4	mutS homolog 4	2.7332	0.0000
9	ENSG00000254465	THAP12P4	THAP domain containing 12 pseudogene 4	2.6458	0.0000
10	ENSG00000200369	RNU6-666P	RNA, U6 small nuclear 666, pseudogene	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000213543	RARRES2P2	retinoic acid receptor responder 2 pseudogene 2	-2.3440	0.0010
63127	ENSG00000224382	LINC00703	long intergenic non-protein coding RNA 703	-2.3433	0.0022
63126	ENSG00000143315	PIGM	phosphatidylinositol glycan anchor biosynthesis class M	-2.3432	0.0000
63125	ENSG00000228917	NECTIN4-AS1	NECTIN4 antisense RNA 1	-2.3431	0.0000
63124	ENSG00000261693		novel transcript, antisense to TSNARE1	-2.3430	0.0000
63123	ENSG00000259985		novel transcript, antisense to B4GALT6	-2.3424	0.0000
63122	ENSG00000223138	RNA5SP450	RNA, 5S ribosomal pseudogene 450	-2.3418	0.0000
63121	ENSG00000257663		novel transcript, antisense to C12orf44	-2.3416	0.0000
63120	ENSG00000180346	TIGD2	tigger transposable element derived 2	-2.3409	0.0002
63119	ENSG00000186564	FOXD2	forkhead box D2	-2.3406	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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