SHOGoiN Cell Methylome: GSM2773618

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773618


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M245Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000271356 ubiquitin specific peptidase 21 (USP21) pseudogene 3.3219 0.0000
2 ENSG00000243871 RN7SL487P RNA, 7SL, cytoplasmic 487, pseudogene 3.1699 0.0000
3 ENSG00000259433 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) (PRKRIR) pseudogene 3.0000 0.0000
4 ENSG00000235748 SEPT14P12 septin 14 pseudogene 12 2.8074 0.0000
5 ENSG00000238680 RNU6-1037P RNA, U6 small nuclear 1037, pseudogene 2.8074 0.0000
6 ENSG00000253584 novel transcript 2.8074 0.0000
7 ENSG00000258930 tetratricopeptide repeat domain 7B (TTC7B) pseudogene 2.8074 0.0000
8 ENSG00000057468 MSH4 mutS homolog 4 2.7332 0.0000
9 ENSG00000254465 THAP12P4 THAP domain containing 12 pseudogene 4 2.6458 0.0000
10 ENSG00000200369 RNU6-666P RNA, U6 small nuclear 666, pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000255680 novel transcript -2.4353 0.0000
63340 ENSG00000198205 ZXDA zinc finger X-linked duplicated A -2.4351 0.0000
63339 ENSG00000182674 KCNB2 potassium voltage-gated channel subfamily B member 2 -2.4346 0.0000
63338 ENSG00000277881 YTH domain family, member 1 (YTHDF1) pseudogene -2.4346 0.0000
63337 ENSG00000223506 SLC20A1P1 solute carrier family 20 member 1 pseudogene 1 -2.4345 0.0009
63336 ENSG00000100439 ABHD4 abhydrolase domain containing 4 -2.4332 0.0000
63335 ENSG00000280433 novel protein, similar to trafficking protein particle complex 10 TRAPPC10 -2.4326 0.0000
63334 ENSG00000267642 novel transcript -2.4321 0.0001
63333 ENSG00000233508 novel transcript -2.4318 0.0000
63332 ENSG00000117036 ETV3 ETS variant 3 -2.4314 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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