SHOGoiN Cell Methylome: GSM2773619

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773619


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M246Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259149 novel transcript 3.4594 0.0000
2 ENSG00000271642 MARK3P1 microtubule affinity regulating kinase 3 pseudogene 1 3.4594 0.0000
3 ENSG00000168126 OR2W6P olfactory receptor family 2 subfamily W member 6 pseudogene 3.3219 0.0000
4 ENSG00000270510 coiled-coil domain containing 90B (CCDC90B) pseudogene 3.3219 0.0000
5 ENSG00000233273 AMMECR1LP1 AMMECR1 like pseudogene 1 3.1699 0.0000
6 ENSG00000233847 novel transcript 3.1699 0.0000
7 ENSG00000234118 RPL13AP6 ribosomal protein L13a pseudogene 6 3.1699 0.0000
8 ENSG00000241136 PAICSP6 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 6 3.1640 0.0000
9 ENSG00000234223 novel transcript 3.1133 0.0000
10 ENSG00000225276 MTND1P18 MT-ND1 pseudogene 18 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000251441 RTEL1P1 regulator of telomere elongation helicase 1 pseudogene 1 -2.5273 0.0000
63340 ENSG00000139364 TMEM132B transmembrane protein 132B -2.5269 0.0000
63339 ENSG00000278727 novel transcript -2.5268 0.0000
63338 ENSG00000100987 VSX1 visual system homeobox 1 -2.5266 0.0000
63337 ENSG00000245904 novel transcript, antisense to BTG1 -2.5263 0.0000
63336 ENSG00000189182 KRT77 keratin 77 -2.5262 0.0000
63335 ENSG00000100906 NFKBIA NFKB inhibitor alpha -2.5253 0.0000
63334 ENSG00000278887 SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae) (SLX1A) pseudogene -2.5249 0.0000
63333 ENSG00000265392 MIR4252 microRNA 4252 -2.5227 0.0000
63332 ENSG00000271650 tripartite motif containing 43 (TRIM43) pseudogene -2.5224 0.0170

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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