Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773619

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773619


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M246Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259149 novel transcript 3.4594 0.0000
2 ENSG00000271642 MARK3P1 microtubule affinity regulating kinase 3 pseudogene 1 3.4594 0.0000
3 ENSG00000168126 OR2W6P olfactory receptor family 2 subfamily W member 6 pseudogene 3.3219 0.0000
4 ENSG00000270510 coiled-coil domain containing 90B (CCDC90B) pseudogene 3.3219 0.0000
5 ENSG00000233273 AMMECR1LP1 AMMECR1 like pseudogene 1 3.1699 0.0000
6 ENSG00000233847 ERCC8-AS1 ERCC8 antisense RNA 1 3.1699 0.0000
7 ENSG00000234118 RPL13AP6 ribosomal protein L13a pseudogene 6 3.1699 0.0000
8 ENSG00000241136 PAICSP6 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 6 3.1640 0.0000
9 ENSG00000234223 novel transcript 3.1133 0.0000
10 ENSG00000225276 MTND1P18 MT-ND1 pseudogene 18 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000251445 novel transcript -2.4352 0.0001
63127 ENSG00000145439 CBR4 carbonyl reductase 4 -2.4352 0.0001
63126 ENSG00000276644 DACH1 dachshund family transcription factor 1 -2.4350 0.0000
63125 ENSG00000128714 HOXD13 homeobox D13 -2.4349 0.0000
63124 ENSG00000119865 CNRIP1 cannabinoid receptor interacting protein 1 -2.4337 0.0000
63123 ENSG00000245848 CEBPA CCAAT enhancer binding protein alpha -2.4331 0.0000
63122 ENSG00000278588 H2BC10 H2B clustered histone 10 -2.4320 0.0000
63121 ENSG00000218690 H2AC10P H2A clustered histone 10, pseudogene -2.4320 0.0000
63120 ENSG00000232599 odz, odd Oz/ten-m homolog 1(Drosophila) (ODZ1) pseudogene -2.4320 0.0000
63119 ENSG00000173598 NUDT4 nudix hydrolase 4 -2.4312 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...